Elena Grassi
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/MatrixRider |
| Branch: RELEASE_3_10 |
| Last Commit: 5a13d6f |
| Last Changed Date: 2019-10-29 13:09:12 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:24:33 -0400 (Wed, 15 Apr 2020).
| Package 963/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| MatrixRider 1.18.0 Elena Grassi
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: MatrixRider |
| Version: 1.18.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/MatrixRider_1.18.0.tar.gz && rm -rf MatrixRider.buildbin-libdir && mkdir MatrixRider.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MatrixRider.buildbin-libdir MatrixRider_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL MatrixRider_1.18.0.zip && rm MatrixRider_1.18.0.tar.gz MatrixRider_1.18.0.zip |
| StartedAt: 2020-04-14 19:57:48 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 19:58:47 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 58.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/MatrixRider_1.18.0.tar.gz && rm -rf MatrixRider.buildbin-libdir && mkdir MatrixRider.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MatrixRider.buildbin-libdir MatrixRider_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL MatrixRider_1.18.0.zip && rm MatrixRider_1.18.0.tar.gz MatrixRider_1.18.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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install for i386
* installing *source* package 'MatrixRider' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/IRanges/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/XVector/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Biostrings/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/S4Vectors/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c Biostring_stubs.c -o Biostring_stubs.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/IRanges/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/XVector/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Biostrings/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/S4Vectors/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c CuTest.c -o CuTest.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/IRanges/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/XVector/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Biostrings/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/S4Vectors/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c R_init_MatrixRider.c -o R_init_MatrixRider.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/IRanges/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/XVector/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Biostrings/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/S4Vectors/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c RunCuTest.c -o RunCuTest.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/IRanges/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/XVector/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Biostrings/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/S4Vectors/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c XVector_stubs.c -o XVector_stubs.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/IRanges/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/XVector/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Biostrings/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/S4Vectors/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c matrix_rider.c -o matrix_rider.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o MatrixRider.dll tmp.def Biostring_stubs.o CuTest.o R_init_MatrixRider.o RunCuTest.o XVector_stubs.o matrix_rider.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/MatrixRider.buildbin-libdir/00LOCK-MatrixRider/00new/MatrixRider/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'IRanges' for request: 'score' when loading 'TFBSTools'
** help
*** installing help indices
converting help for package 'MatrixRider'
finding HTML links ... done
MatrixRider-package html
getSeqOccupancy-method html
finding level-2 HTML links ... done
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'IRanges' for request: 'score' when loading 'TFBSTools'
** testing if installed package can be loaded from final location
No methods found in package 'IRanges' for request: 'score' when loading 'TFBSTools'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MatrixRider' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/IRanges/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/XVector/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Biostrings/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/S4Vectors/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c Biostring_stubs.c -o Biostring_stubs.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/IRanges/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/XVector/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Biostrings/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/S4Vectors/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c CuTest.c -o CuTest.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/IRanges/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/XVector/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Biostrings/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/S4Vectors/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c R_init_MatrixRider.c -o R_init_MatrixRider.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/IRanges/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/XVector/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Biostrings/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/S4Vectors/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c RunCuTest.c -o RunCuTest.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/IRanges/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/XVector/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Biostrings/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/S4Vectors/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c XVector_stubs.c -o XVector_stubs.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/IRanges/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/XVector/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Biostrings/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/S4Vectors/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c matrix_rider.c -o matrix_rider.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o MatrixRider.dll tmp.def Biostring_stubs.o CuTest.o R_init_MatrixRider.o RunCuTest.o XVector_stubs.o matrix_rider.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/MatrixRider.buildbin-libdir/MatrixRider/libs/x64
** testing if installed package can be loaded
No methods found in package 'IRanges' for request: 'score' when loading 'TFBSTools'
* MD5 sums
packaged installation of 'MatrixRider' as MatrixRider_1.18.0.zip
* DONE (MatrixRider)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'MatrixRider' successfully unpacked and MD5 sums checked