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INSTALL report for MatrixRider on malbec1

This page was generated on 2020-04-15 12:09:48 -0400 (Wed, 15 Apr 2020).

Package 963/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MatrixRider 1.18.0
Elena Grassi
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/MatrixRider
Branch: RELEASE_3_10
Last Commit: 5a13d6f
Last Changed Date: 2019-10-29 13:09:12 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: MatrixRider
Version: 1.18.0
Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL MatrixRider
StartedAt: 2020-04-14 18:47:12 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 18:47:48 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 36.5 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL MatrixRider
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* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘MatrixRider’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/IRanges/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/XVector/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/Biostrings/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/S4Vectors/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c Biostring_stubs.c -o Biostring_stubs.o
gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/IRanges/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/XVector/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/Biostrings/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/S4Vectors/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c CuTest.c -o CuTest.o
gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/IRanges/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/XVector/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/Biostrings/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/S4Vectors/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c R_init_MatrixRider.c -o R_init_MatrixRider.o
gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/IRanges/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/XVector/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/Biostrings/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/S4Vectors/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c RunCuTest.c -o RunCuTest.o
gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/IRanges/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/XVector/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/Biostrings/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/S4Vectors/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c XVector_stubs.c -o XVector_stubs.o
gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/IRanges/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/XVector/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/Biostrings/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/S4Vectors/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c matrix_rider.c -o matrix_rider.o
gcc -shared -L/home/biocbuild/bbs-3.10-bioc/R/lib -L/usr/local/lib -o MatrixRider.so Biostring_stubs.o CuTest.o R_init_MatrixRider.o RunCuTest.o XVector_stubs.o matrix_rider.o -L/home/biocbuild/bbs-3.10-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.10-bioc/R/library/00LOCK-MatrixRider/00new/MatrixRider/libs
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package ‘IRanges’ for request: ‘score’ when loading ‘TFBSTools’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package ‘IRanges’ for request: ‘score’ when loading ‘TFBSTools’
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
No methods found in package ‘IRanges’ for request: ‘score’ when loading ‘TFBSTools’
** testing if installed package keeps a record of temporary installation path
* DONE (MatrixRider)