Simon Anders
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/HilbertVisGUI |
| Branch: RELEASE_3_10 |
| Last Commit: d4e14c0 |
| Last Changed Date: 2019-10-29 13:08:00 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:18:39 -0400 (Wed, 15 Apr 2020).
| Package 790/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| HilbertVisGUI 1.44.0 Simon Anders
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | ...NOT SUPPORTED... | ||||||||||
| Package: HilbertVisGUI |
| Version: 1.44.0 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch HilbertVisGUI |
| StartedAt: 2020-04-14 18:54:17 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 19:01:48 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 450.7 seconds |
| RetCode: 0 |
| Status: OK |
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###
### Running command:
###
### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch HilbertVisGUI
###
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* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
* installing *source* package 'HilbertVisGUI' ...
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -I"C:/extsoft/include" -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -O2 -Wall -std=gnu99 -mtune=core2 -c R_env_prot.c -o R_env_prot.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c R_interface.cc -o R_interface.o
In file included from C:/gtkmm64/include/cairo/cairo-ft.h:50:0,
from C:/gtkmm64/include/cairomm-1.0/cairomm/fontoptions.h:26,
from C:/gtkmm64/include/gdkmm-2.4/gdkmm/screen.h:35,
from C:/gtkmm64/include/gdkmm-2.4/gdkmm.h:27,
from C:/gtkmm64/include/gtkmm-2.4/gtkmm.h:89,
from display.h:7,
from R_interface.cc:8:
C:/gtkmm64/include/fontconfig/fontconfig.h:115:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_CACHE_SUFFIX ".cache-"FC_CACHE_VERSION
^
C:/gtkmm64/include/fontconfig/fontconfig.h:116:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_DIR_CACHE_FILE "fonts.cache-"FC_CACHE_VERSION
^
C:/gtkmm64/include/fontconfig/fontconfig.h:117:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_USER_CACHE_FILE ".fonts.cache-"FC_CACHE_VERSION
^
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/include/R.h:91:0,
from R_interface.cc:17:
C:/Users/biocbuild/bbs-3.10-bioc/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
#define ERROR ),error(R_problem_buf);}
^
In file included from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:71:0,
from R_interface.cc:13:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
#define ERROR 0
^
R_interface.cc: In function 'SEXPREC* R_display_hilbert(SEXP)':
R_interface.cc:510:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( int i = 0; i < palette_steps->size(); i++ )
^
R_interface.cc:509:11: warning: unused variable 'palette_level' [-Wunused-variable]
double palette_level = log( REAL( max_palette_valueR )[ 0 ] ) / log( 10. ) * 4;
^
R_interface.cc: In member function 'void MainWindowForRForBidir::set_palette_level(double)':
R_interface.cc:702:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( int i = 0; i < palette_steps->size(); i++ )
^
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = int]':
R_interface.cc:135:9: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized]
if( INTEGER(data)[i] < val )
^
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = double]':
R_interface.cc:196:9: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized]
if( REAL(data)[i] < val )
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c colorizers.cc -o colorizers.o
In file included from C:/gtkmm64/include/cairo/cairo-ft.h:50:0,
from C:/gtkmm64/include/cairomm-1.0/cairomm/fontoptions.h:26,
from C:/gtkmm64/include/gdkmm-2.4/gdkmm/screen.h:35,
from C:/gtkmm64/include/gdkmm-2.4/gdkmm.h:27,
from C:/gtkmm64/include/gtkmm-2.4/gtkmm.h:89,
from colorizers.h:6,
from colorizers.cc:1:
C:/gtkmm64/include/fontconfig/fontconfig.h:115:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_CACHE_SUFFIX ".cache-"FC_CACHE_VERSION
^
C:/gtkmm64/include/fontconfig/fontconfig.h:116:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_DIR_CACHE_FILE "fonts.cache-"FC_CACHE_VERSION
^
C:/gtkmm64/include/fontconfig/fontconfig.h:117:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_USER_CACHE_FILE ".fonts.cache-"FC_CACHE_VERSION
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c display.cc -o display.o
In file included from C:/gtkmm64/include/cairo/cairo-ft.h:50:0,
from C:/gtkmm64/include/cairomm-1.0/cairomm/fontoptions.h:26,
from C:/gtkmm64/include/gdkmm-2.4/gdkmm/screen.h:35,
from C:/gtkmm64/include/gdkmm-2.4/gdkmm.h:27,
from C:/gtkmm64/include/gtkmm-2.4/gtkmm.h:89,
from display.h:7,
from display.cc:1:
C:/gtkmm64/include/fontconfig/fontconfig.h:115:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_CACHE_SUFFIX ".cache-"FC_CACHE_VERSION
^
C:/gtkmm64/include/fontconfig/fontconfig.h:116:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_DIR_CACHE_FILE "fonts.cache-"FC_CACHE_VERSION
^
C:/gtkmm64/include/fontconfig/fontconfig.h:117:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_USER_CACHE_FILE ".fonts.cache-"FC_CACHE_VERSION
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c ruler.cc -o ruler.o
In file included from C:/gtkmm64/include/cairo/cairo-ft.h:50:0,
from C:/gtkmm64/include/cairomm-1.0/cairomm/fontoptions.h:26,
from C:/gtkmm64/include/gdkmm-2.4/gdkmm/screen.h:35,
from C:/gtkmm64/include/gdkmm-2.4/gdkmm.h:27,
from C:/gtkmm64/include/gtkmm-2.4/gtkmm.h:89,
from ruler.h:4,
from ruler.cc:6:
C:/gtkmm64/include/fontconfig/fontconfig.h:115:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_CACHE_SUFFIX ".cache-"FC_CACHE_VERSION
^
C:/gtkmm64/include/fontconfig/fontconfig.h:116:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_DIR_CACHE_FILE "fonts.cache-"FC_CACHE_VERSION
^
C:/gtkmm64/include/fontconfig/fontconfig.h:117:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_USER_CACHE_FILE ".fonts.cache-"FC_CACHE_VERSION
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c window.cc -o window.o
In file included from C:/gtkmm64/include/cairo/cairo-ft.h:50:0,
from C:/gtkmm64/include/cairomm-1.0/cairomm/fontoptions.h:26,
from C:/gtkmm64/include/gdkmm-2.4/gdkmm/screen.h:35,
from C:/gtkmm64/include/gdkmm-2.4/gdkmm.h:27,
from C:/gtkmm64/include/gtkmm-2.4/gtkmm.h:89,
from window.h:5,
from window.cc:4:
C:/gtkmm64/include/fontconfig/fontconfig.h:115:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_CACHE_SUFFIX ".cache-"FC_CACHE_VERSION
^
C:/gtkmm64/include/fontconfig/fontconfig.h:116:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_DIR_CACHE_FILE "fonts.cache-"FC_CACHE_VERSION
^
C:/gtkmm64/include/fontconfig/fontconfig.h:117:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_USER_CACHE_FILE ".fonts.cache-"FC_CACHE_VERSION
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o HilbertVisGUI.dll tmp.def R_env_prot.o R_interface.o colorizers.o display.o ruler.o window.o -LC:/gtkmm64/lib -Lc:/devel/dist/win64/libpng-1.4.3-1/lib -lgtkmm-2.4 -latkmm-1.6 -lgdkmm-2.4 -lgiomm-2.4 -lpangomm-1.4 -lgtk-win32-2.0 -lglibmm-2.4 -lcairomm-1.0 -lsigc-2.0 -lgdk-win32-2.0 -latk-1.0 -lgio-2.0 -lpangowin32-1.0 -lgdi32 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lpng14 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lglib-2.0 -lintl -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/biocbuild/bbs-3.10-bioc/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/R/library/00LOCK-HilbertVisGUI/00new/HilbertVisGUI/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'HilbertVisGUI'
finding HTML links ... done
dotsapply html
hilbertDisplay html
hilbertDisplayThreeChannel html
simpleLinPlot html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HilbertVisGUI)
Making 'packages.html' ... done