Simon Anders
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/HilbertVisGUI |
| Branch: RELEASE_3_10 |
| Last Commit: d4e14c0 |
| Last Changed Date: 2019-10-29 13:08:00 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:18:39 -0400 (Wed, 15 Apr 2020).
| Package 790/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| HilbertVisGUI 1.44.0 Simon Anders
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | ...NOT SUPPORTED... | ||||||||||
| Package: HilbertVisGUI |
| Version: 1.44.0 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe --arch x64 CMD check --no-multiarch --install=check:HilbertVisGUI.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings HilbertVisGUI_1.44.0.tar.gz |
| StartedAt: 2020-04-15 03:53:48 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 03:55:46 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 117.1 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: HilbertVisGUI.Rcheck |
| Warnings: 2 |
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###
### Running command:
###
### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe --arch x64 CMD check --no-multiarch --install=check:HilbertVisGUI.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings HilbertVisGUI_1.44.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/HilbertVisGUI.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HilbertVisGUI/DESCRIPTION' ... OK
* this is package 'HilbertVisGUI' version '1.44.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'HilbertVisGUI' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... WARNING
---- unloading
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
hilbertDisplay: no visible global function definition for
'colorRampPalette'
hilbertDisplay: no visible global function definition for 'col2rgb'
hilbertDisplay: no visible global function definition for 'median'
hilbertDisplayThreeChannel: no visible global function definition for
'col2rgb'
Undefined global functions or variables:
col2rgb colorRampPalette median
Consider adding
importFrom("grDevices", "col2rgb", "colorRampPalette")
importFrom("stats", "median")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... WARNING
Non-portable flags in variable 'PKG_CPPFLAGS':
-mms-bitfields
Non-portable flags in variable 'PKG_CFLAGS':
-mms-bitfields
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking include directives in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.10-bioc/R/library/HilbertVisGUI/libs/x64/HilbertVisGUI.dll':
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Found 'printf', possibly from 'printf' (C)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
hilbertDisplay 0.31 0.82 48.3
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 5 NOTEs
See
'C:/Users/biocbuild/bbs-3.10-bioc/meat/HilbertVisGUI.Rcheck/00check.log'
for details.
HilbertVisGUI.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch HilbertVisGUI
###
##############################################################################
##############################################################################
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
* installing *source* package 'HilbertVisGUI' ...
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -I"C:/extsoft/include" -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -O2 -Wall -std=gnu99 -mtune=core2 -c R_env_prot.c -o R_env_prot.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c R_interface.cc -o R_interface.o
In file included from C:/gtkmm64/include/cairo/cairo-ft.h:50:0,
from C:/gtkmm64/include/cairomm-1.0/cairomm/fontoptions.h:26,
from C:/gtkmm64/include/gdkmm-2.4/gdkmm/screen.h:35,
from C:/gtkmm64/include/gdkmm-2.4/gdkmm.h:27,
from C:/gtkmm64/include/gtkmm-2.4/gtkmm.h:89,
from display.h:7,
from R_interface.cc:8:
C:/gtkmm64/include/fontconfig/fontconfig.h:115:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_CACHE_SUFFIX ".cache-"FC_CACHE_VERSION
^
C:/gtkmm64/include/fontconfig/fontconfig.h:116:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_DIR_CACHE_FILE "fonts.cache-"FC_CACHE_VERSION
^
C:/gtkmm64/include/fontconfig/fontconfig.h:117:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_USER_CACHE_FILE ".fonts.cache-"FC_CACHE_VERSION
^
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/include/R.h:91:0,
from R_interface.cc:17:
C:/Users/biocbuild/bbs-3.10-bioc/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
#define ERROR ),error(R_problem_buf);}
^
In file included from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:71:0,
from R_interface.cc:13:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
#define ERROR 0
^
R_interface.cc: In function 'SEXPREC* R_display_hilbert(SEXP)':
R_interface.cc:510:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( int i = 0; i < palette_steps->size(); i++ )
^
R_interface.cc:509:11: warning: unused variable 'palette_level' [-Wunused-variable]
double palette_level = log( REAL( max_palette_valueR )[ 0 ] ) / log( 10. ) * 4;
^
R_interface.cc: In member function 'void MainWindowForRForBidir::set_palette_level(double)':
R_interface.cc:702:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( int i = 0; i < palette_steps->size(); i++ )
^
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = int]':
R_interface.cc:135:9: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized]
if( INTEGER(data)[i] < val )
^
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = double]':
R_interface.cc:196:9: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized]
if( REAL(data)[i] < val )
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c colorizers.cc -o colorizers.o
In file included from C:/gtkmm64/include/cairo/cairo-ft.h:50:0,
from C:/gtkmm64/include/cairomm-1.0/cairomm/fontoptions.h:26,
from C:/gtkmm64/include/gdkmm-2.4/gdkmm/screen.h:35,
from C:/gtkmm64/include/gdkmm-2.4/gdkmm.h:27,
from C:/gtkmm64/include/gtkmm-2.4/gtkmm.h:89,
from colorizers.h:6,
from colorizers.cc:1:
C:/gtkmm64/include/fontconfig/fontconfig.h:115:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_CACHE_SUFFIX ".cache-"FC_CACHE_VERSION
^
C:/gtkmm64/include/fontconfig/fontconfig.h:116:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_DIR_CACHE_FILE "fonts.cache-"FC_CACHE_VERSION
^
C:/gtkmm64/include/fontconfig/fontconfig.h:117:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_USER_CACHE_FILE ".fonts.cache-"FC_CACHE_VERSION
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c display.cc -o display.o
In file included from C:/gtkmm64/include/cairo/cairo-ft.h:50:0,
from C:/gtkmm64/include/cairomm-1.0/cairomm/fontoptions.h:26,
from C:/gtkmm64/include/gdkmm-2.4/gdkmm/screen.h:35,
from C:/gtkmm64/include/gdkmm-2.4/gdkmm.h:27,
from C:/gtkmm64/include/gtkmm-2.4/gtkmm.h:89,
from display.h:7,
from display.cc:1:
C:/gtkmm64/include/fontconfig/fontconfig.h:115:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_CACHE_SUFFIX ".cache-"FC_CACHE_VERSION
^
C:/gtkmm64/include/fontconfig/fontconfig.h:116:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_DIR_CACHE_FILE "fonts.cache-"FC_CACHE_VERSION
^
C:/gtkmm64/include/fontconfig/fontconfig.h:117:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_USER_CACHE_FILE ".fonts.cache-"FC_CACHE_VERSION
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c ruler.cc -o ruler.o
In file included from C:/gtkmm64/include/cairo/cairo-ft.h:50:0,
from C:/gtkmm64/include/cairomm-1.0/cairomm/fontoptions.h:26,
from C:/gtkmm64/include/gdkmm-2.4/gdkmm/screen.h:35,
from C:/gtkmm64/include/gdkmm-2.4/gdkmm.h:27,
from C:/gtkmm64/include/gtkmm-2.4/gtkmm.h:89,
from ruler.h:4,
from ruler.cc:6:
C:/gtkmm64/include/fontconfig/fontconfig.h:115:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_CACHE_SUFFIX ".cache-"FC_CACHE_VERSION
^
C:/gtkmm64/include/fontconfig/fontconfig.h:116:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_DIR_CACHE_FILE "fonts.cache-"FC_CACHE_VERSION
^
C:/gtkmm64/include/fontconfig/fontconfig.h:117:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_USER_CACHE_FILE ".fonts.cache-"FC_CACHE_VERSION
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c window.cc -o window.o
In file included from C:/gtkmm64/include/cairo/cairo-ft.h:50:0,
from C:/gtkmm64/include/cairomm-1.0/cairomm/fontoptions.h:26,
from C:/gtkmm64/include/gdkmm-2.4/gdkmm/screen.h:35,
from C:/gtkmm64/include/gdkmm-2.4/gdkmm.h:27,
from C:/gtkmm64/include/gtkmm-2.4/gtkmm.h:89,
from window.h:5,
from window.cc:4:
C:/gtkmm64/include/fontconfig/fontconfig.h:115:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_CACHE_SUFFIX ".cache-"FC_CACHE_VERSION
^
C:/gtkmm64/include/fontconfig/fontconfig.h:116:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_DIR_CACHE_FILE "fonts.cache-"FC_CACHE_VERSION
^
C:/gtkmm64/include/fontconfig/fontconfig.h:117:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
#define FC_USER_CACHE_FILE ".fonts.cache-"FC_CACHE_VERSION
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o HilbertVisGUI.dll tmp.def R_env_prot.o R_interface.o colorizers.o display.o ruler.o window.o -LC:/gtkmm64/lib -Lc:/devel/dist/win64/libpng-1.4.3-1/lib -lgtkmm-2.4 -latkmm-1.6 -lgdkmm-2.4 -lgiomm-2.4 -lpangomm-1.4 -lgtk-win32-2.0 -lglibmm-2.4 -lcairomm-1.0 -lsigc-2.0 -lgdk-win32-2.0 -latk-1.0 -lgio-2.0 -lpangowin32-1.0 -lgdi32 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lpng14 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lglib-2.0 -lintl -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/biocbuild/bbs-3.10-bioc/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/R/library/00LOCK-HilbertVisGUI/00new/HilbertVisGUI/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'HilbertVisGUI'
finding HTML links ... done
dotsapply html
hilbertDisplay html
hilbertDisplayThreeChannel html
simpleLinPlot html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HilbertVisGUI)
Making 'packages.html' ... done
HilbertVisGUI.Rcheck/HilbertVisGUI-Ex.timings
| name | user | system | elapsed | |
| hilbertDisplay | 0.31 | 0.82 | 48.30 | |