Jakob Theorell
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/DepecheR |
| Branch: RELEASE_3_10 |
| Last Commit: 42a15a4 |
| Last Changed Date: 2020-03-02 16:32:40 -0400 (Mon, 02 Mar 2020) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:31:59 -0400 (Wed, 15 Apr 2020).
| Package 437/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| DepecheR 1.2.2 Jakob Theorell
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: DepecheR |
| Version: 1.2.2 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/DepecheR_1.2.2.tar.gz && rm -rf DepecheR.buildbin-libdir && mkdir DepecheR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DepecheR.buildbin-libdir DepecheR_1.2.2.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL DepecheR_1.2.2.zip && rm DepecheR_1.2.2.tar.gz DepecheR_1.2.2.zip |
| StartedAt: 2020-04-14 19:02:01 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 19:03:34 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 92.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/DepecheR_1.2.2.tar.gz && rm -rf DepecheR.buildbin-libdir && mkdir DepecheR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DepecheR.buildbin-libdir DepecheR_1.2.2.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL DepecheR_1.2.2.zip && rm DepecheR_1.2.2.tar.gz DepecheR_1.2.2.zip
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install for i386
* installing *source* package 'DepecheR' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I../inst/include -pthread -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c Clusterer.cpp -o Clusterer.o
Clusterer.cpp: In member function 'double Clusterer::cluster_norm(const RowMatrixXd&, const RowMatrixXd&, Eigen::VectorXi, double)':
Clusterer.cpp:204:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i = 0; i<centers.cols(); i++){
^
Clusterer.cpp:205:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int j = 0; j<centers.rows(); j++){
^
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I../inst/include -pthread -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c InterfaceUtils.cpp -o InterfaceUtils.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I../inst/include -pthread -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o DepecheR.dll tmp.def Clusterer.o InterfaceUtils.o RcppExports.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
if test -e "/usr/bin/strip" && test -e "/bin/uname" && [[ `uname` == "Linux" ]] ; then /usr/bin/strip --strip-debug DepecheR.dll; fi
rm *.o
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/DepecheR.buildbin-libdir/00LOCK-DepecheR/00new/DepecheR/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'DepecheR'
finding HTML links ... done
DepecheR-package html
dAllocate html
dColorPlot html
dColorVector html
dContours html
dDensityPlot html
dResidualPlot html
dScale html
dSplsda html
dViolins html
dWilcox html
depeche html
groupProbPlot html
microClust html
testData html
testDataDepeche html
testDataSNE html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'DepecheR' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I../inst/include -pthread -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c Clusterer.cpp -o Clusterer.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I../inst/include -pthread -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c InterfaceUtils.cpp -o InterfaceUtils.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I../inst/include -pthread -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o DepecheR.dll tmp.def Clusterer.o InterfaceUtils.o RcppExports.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
if test -e "/usr/bin/strip" && test -e "/bin/uname" && [[ `uname` == "Linux" ]] ; then /usr/bin/strip --strip-debug DepecheR.dll; fi
rm *.o
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/DepecheR.buildbin-libdir/DepecheR/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DepecheR' as DepecheR_1.2.2.zip
* DONE (DepecheR)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'DepecheR' successfully unpacked and MD5 sums checked