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BUILD BIN report for DepecheR on tokay1

This page was generated on 2020-04-15 12:32:00 -0400 (Wed, 15 Apr 2020).

Package 437/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DepecheR 1.2.2
Jakob Theorell
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/DepecheR
Branch: RELEASE_3_10
Last Commit: 42a15a4
Last Changed Date: 2020-03-02 16:32:40 -0400 (Mon, 02 Mar 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: DepecheR
Version: 1.2.2
Command: rm -rf DepecheR.buildbin-libdir && mkdir DepecheR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DepecheR.buildbin-libdir DepecheR_1.2.2.tar.gz
StartedAt: 2020-04-15 08:34:38 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 08:35:41 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 62.4 seconds
RetCode: 0
Status:  OK  
PackageFile: DepecheR_1.2.2.zip
PackageFileSize: 2.84 MiB

Command output

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### Running command:
###
###   rm -rf DepecheR.buildbin-libdir && mkdir DepecheR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DepecheR.buildbin-libdir DepecheR_1.2.2.tar.gz
###
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install for i386

* installing *source* package 'DepecheR' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I../inst/include -pthread -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c Clusterer.cpp -o Clusterer.o
Clusterer.cpp: In member function 'double Clusterer::cluster_norm(const RowMatrixXd&, const RowMatrixXd&, Eigen::VectorXi, double)':
Clusterer.cpp:204:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(unsigned int i = 0; i<centers.cols(); i++){
                              ^
Clusterer.cpp:205:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(unsigned int j = 0; j<centers.rows(); j++){
                                  ^
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I../inst/include -pthread -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c InterfaceUtils.cpp -o InterfaceUtils.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I../inst/include -pthread -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o DepecheR.dll tmp.def Clusterer.o InterfaceUtils.o RcppExports.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
if test -e "/usr/bin/strip" && test -e "/bin/uname" && [[ `uname` == "Linux" ]] ; then /usr/bin/strip --strip-debug DepecheR.dll; fi
rm *.o
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/DepecheR.buildbin-libdir/00LOCK-DepecheR/00new/DepecheR/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DepecheR'
    finding HTML links ... done
    DepecheR-package                        html  
    dAllocate                               html  
    dColorPlot                              html  
    dColorVector                            html  
    dContours                               html  
    dDensityPlot                            html  
    dResidualPlot                           html  
    dScale                                  html  
    dSplsda                                 html  
    dViolins                                html  
    dWilcox                                 html  
    depeche                                 html  
    groupProbPlot                           html  
    microClust                              html  
    testData                                html  
    testDataDepeche                         html  
    testDataSNE                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DepecheR' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I../inst/include -pthread -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c Clusterer.cpp -o Clusterer.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I../inst/include -pthread -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c InterfaceUtils.cpp -o InterfaceUtils.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I../inst/include -pthread -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o DepecheR.dll tmp.def Clusterer.o InterfaceUtils.o RcppExports.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
if test -e "/usr/bin/strip" && test -e "/bin/uname" && [[ `uname` == "Linux" ]] ; then /usr/bin/strip --strip-debug DepecheR.dll; fi
rm *.o
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/DepecheR.buildbin-libdir/DepecheR/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DepecheR' as DepecheR_1.2.2.zip
* DONE (DepecheR)