Back to Multiple platform build/check report for BioC 3.10
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for BiocNeighbors on malbec1

This page was generated on 2020-04-15 12:14:27 -0400 (Wed, 15 Apr 2020).

Package 153/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocNeighbors 1.4.2
Aaron Lun
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/BiocNeighbors
Branch: RELEASE_3_10
Last Commit: 1fcb470
Last Changed Date: 2020-02-29 00:44:32 -0400 (Sat, 29 Feb 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64 [ OK ] OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: BiocNeighbors
Version: 1.4.2
Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL BiocNeighbors
StartedAt: 2020-04-14 18:32:15 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 18:33:54 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 98.9 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL BiocNeighbors
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘BiocNeighbors’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c annoy.cpp -o annoy.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c build_annoy.cpp -o build_annoy.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c build_hnsw.cpp -o build_hnsw.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c build_vptree.cpp -o build_vptree.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c distances.cpp -o distances.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c find_annoy.cpp -o find_annoy.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c find_hnsw.cpp -o find_hnsw.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c find_kmknn.cpp -o find_kmknn.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c find_vptree.cpp -o find_vptree.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c hnsw.cpp -o hnsw.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c kmknn.cpp -o kmknn.o
In file included from kmknn.cpp:1:0:
kmknn.cpp: In instantiation of ‘Kmknn<Distance>::Kmknn(Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::List, bool) [with Distance = BNManhattan; Rcpp::NumericMatrix = Rcpp::Matrix<14>; Rcpp::List = Rcpp::Vector<19>]’:
kmknn.cpp:218:16:   required from here
kmknn.h:37:31: warning: ‘Kmknn<BNManhattan>::centers’ will be initialized after [-Wreorder]
     const Rcpp::NumericMatrix centers;
                               ^~~~~~~
kmknn.h:33:20: warning:   ‘neighbor_queue Kmknn<BNManhattan>::nearest’ [-Wreorder]
     neighbor_queue nearest;
                    ^~~~~~~
kmknn.cpp:13:1: warning:   when initialized here [-Wreorder]
 Kmknn<Distance>::Kmknn(Rcpp::NumericMatrix ex, Rcpp::NumericMatrix cen, Rcpp::List info, bool warn_ties) :
 ^~~~~~~~~~~~~~~
In file included from kmknn.cpp:1:0:
kmknn.cpp: In instantiation of ‘Kmknn<Distance>::Kmknn(Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::List, bool) [with Distance = BNEuclidean; Rcpp::NumericMatrix = Rcpp::Matrix<14>; Rcpp::List = Rcpp::Vector<19>]’:
kmknn.cpp:219:16:   required from here
kmknn.h:37:31: warning: ‘Kmknn<BNEuclidean>::centers’ will be initialized after [-Wreorder]
     const Rcpp::NumericMatrix centers;
                               ^~~~~~~
kmknn.h:33:20: warning:   ‘neighbor_queue Kmknn<BNEuclidean>::nearest’ [-Wreorder]
     neighbor_queue nearest;
                    ^~~~~~~
kmknn.cpp:13:1: warning:   when initialized here [-Wreorder]
 Kmknn<Distance>::Kmknn(Rcpp::NumericMatrix ex, Rcpp::NumericMatrix cen, Rcpp::List info, bool warn_ties) :
 ^~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c query_annoy.cpp -o query_annoy.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c query_hnsw.cpp -o query_hnsw.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c query_kmknn.cpp -o query_kmknn.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c query_vptree.cpp -o query_vptree.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c utils.cpp -o utils.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c vptree.cpp -o vptree.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.10-bioc/R/lib -L/usr/local/lib -o BiocNeighbors.so RcppExports.o annoy.o build_annoy.o build_hnsw.o build_vptree.o distances.o find_annoy.o find_hnsw.o find_kmknn.o find_vptree.o hnsw.o kmknn.o query_annoy.o query_hnsw.o query_kmknn.o query_vptree.o utils.o vptree.o -L/home/biocbuild/bbs-3.10-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.10-bioc/R/library/00LOCK-BiocNeighbors/00new/BiocNeighbors/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiocNeighbors)