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INSTALL report for BiocNeighbors on tokay1

This page was generated on 2020-04-15 12:30:46 -0400 (Wed, 15 Apr 2020).

Package 153/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocNeighbors 1.4.2
Aaron Lun
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/BiocNeighbors
Branch: RELEASE_3_10
Last Commit: 1fcb470
Last Changed Date: 2020-02-29 00:44:32 -0400 (Sat, 29 Feb 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: BiocNeighbors
Version: 1.4.2
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/BiocNeighbors_1.4.2.tar.gz && rm -rf BiocNeighbors.buildbin-libdir && mkdir BiocNeighbors.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocNeighbors.buildbin-libdir BiocNeighbors_1.4.2.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL BiocNeighbors_1.4.2.zip && rm BiocNeighbors_1.4.2.tar.gz BiocNeighbors_1.4.2.zip
StartedAt: 2020-04-14 19:09:27 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 19:13:39 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 252.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/BiocNeighbors_1.4.2.tar.gz && rm -rf BiocNeighbors.buildbin-libdir && mkdir BiocNeighbors.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocNeighbors.buildbin-libdir BiocNeighbors_1.4.2.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL BiocNeighbors_1.4.2.zip && rm BiocNeighbors_1.4.2.tar.gz BiocNeighbors_1.4.2.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 59864  100 59864    0     0  1530k      0 --:--:-- --:--:-- --:--:-- 1719k

install for i386

* installing *source* package 'BiocNeighbors' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c annoy.cpp -o annoy.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c build_annoy.cpp -o build_annoy.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c build_hnsw.cpp -o build_hnsw.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c build_vptree.cpp -o build_vptree.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c distances.cpp -o distances.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c find_annoy.cpp -o find_annoy.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c find_hnsw.cpp -o find_hnsw.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c find_kmknn.cpp -o find_kmknn.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c find_vptree.cpp -o find_vptree.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c hnsw.cpp -o hnsw.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c kmknn.cpp -o kmknn.o
In file included from kmknn.cpp:1:0:
kmknn.cpp: In instantiation of 'Kmknn<Distance>::Kmknn(Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::List, bool) [with Distance = BNManhattan; Rcpp::NumericMatrix = Rcpp::Matrix<14>; Rcpp::List = Rcpp::Vector<19>]':
kmknn.cpp:218:16:   required from here
kmknn.h:37:31: warning: 'Kmknn<BNManhattan>::centers' will be initialized after [-Wreorder]
     const Rcpp::NumericMatrix centers;
                               ^
kmknn.h:33:20: warning:   'neighbor_queue Kmknn<BNManhattan>::nearest' [-Wreorder]
     neighbor_queue nearest;
                    ^
kmknn.cpp:13:1: warning:   when initialized here [-Wreorder]
 Kmknn<Distance>::Kmknn(Rcpp::NumericMatrix ex, Rcpp::NumericMatrix cen, Rcpp::List info, bool warn_ties) : 
 ^
In file included from kmknn.cpp:1:0:
kmknn.cpp: In instantiation of 'Kmknn<Distance>::Kmknn(Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::List, bool) [with Distance = BNEuclidean; Rcpp::NumericMatrix = Rcpp::Matrix<14>; Rcpp::List = Rcpp::Vector<19>]':
kmknn.cpp:219:16:   required from here
kmknn.h:37:31: warning: 'Kmknn<BNEuclidean>::centers' will be initialized after [-Wreorder]
     const Rcpp::NumericMatrix centers;
                               ^
kmknn.h:33:20: warning:   'neighbor_queue Kmknn<BNEuclidean>::nearest' [-Wreorder]
     neighbor_queue nearest;
                    ^
kmknn.cpp:13:1: warning:   when initialized here [-Wreorder]
 Kmknn<Distance>::Kmknn(Rcpp::NumericMatrix ex, Rcpp::NumericMatrix cen, Rcpp::List info, bool warn_ties) : 
 ^
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c query_annoy.cpp -o query_annoy.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c query_hnsw.cpp -o query_hnsw.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c query_kmknn.cpp -o query_kmknn.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c query_vptree.cpp -o query_vptree.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c utils.cpp -o utils.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c vptree.cpp -o vptree.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o BiocNeighbors.dll tmp.def RcppExports.o annoy.o build_annoy.o build_hnsw.o build_vptree.o distances.o find_annoy.o find_hnsw.o find_kmknn.o find_vptree.o hnsw.o kmknn.o query_annoy.o query_hnsw.o query_kmknn.o query_vptree.o utils.o vptree.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/BiocNeighbors.buildbin-libdir/00LOCK-BiocNeighbors/00new/BiocNeighbors/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BiocNeighbors'
    finding HTML links ... done
    AnnoyIndex                              html  
    AnnoyParam                              html  
    BiocNeighborIndex                       html  
    BiocNeighborParam                       html  
    BiocNeighbors-algorithms                html  
    BiocNeighbors-raw-index                 html  
    BiocNeighbors-ties                      html  
    HnswIndex                               html  
    HnswParam                               html  
    KmknnIndex                              html  
    KmknnParam                              html  
    VptreeIndex                             html  
    VptreeParam                             html  
    buildAnnoy                              html  
    buildHnsw                               html  
    buildIndex                              html  
    buildKmknn                              html  
    buildVptree                             html  
    find-methods                            html  
    finding level-2 HTML links ... done

    findKNN                                 html  
    findNeighbors                           html  
    query-methods                           html  
    queryKNN                                html  
    queryNeighbors                          html  
    rangeFind-methods                       html  
    rangeQuery-methods                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BiocNeighbors' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c annoy.cpp -o annoy.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c build_annoy.cpp -o build_annoy.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c build_hnsw.cpp -o build_hnsw.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c build_vptree.cpp -o build_vptree.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c distances.cpp -o distances.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c find_annoy.cpp -o find_annoy.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c find_hnsw.cpp -o find_hnsw.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c find_kmknn.cpp -o find_kmknn.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c find_vptree.cpp -o find_vptree.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c hnsw.cpp -o hnsw.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c kmknn.cpp -o kmknn.o
In file included from kmknn.cpp:1:0:
kmknn.cpp: In instantiation of 'Kmknn<Distance>::Kmknn(Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::List, bool) [with Distance = BNManhattan; Rcpp::NumericMatrix = Rcpp::Matrix<14>; Rcpp::List = Rcpp::Vector<19>]':
kmknn.cpp:218:16:   required from here
kmknn.h:37:31: warning: 'Kmknn<BNManhattan>::centers' will be initialized after [-Wreorder]
     const Rcpp::NumericMatrix centers;
                               ^
kmknn.h:33:20: warning:   'neighbor_queue Kmknn<BNManhattan>::nearest' [-Wreorder]
     neighbor_queue nearest;
                    ^
kmknn.cpp:13:1: warning:   when initialized here [-Wreorder]
 Kmknn<Distance>::Kmknn(Rcpp::NumericMatrix ex, Rcpp::NumericMatrix cen, Rcpp::List info, bool warn_ties) : 
 ^
In file included from kmknn.cpp:1:0:
kmknn.cpp: In instantiation of 'Kmknn<Distance>::Kmknn(Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::List, bool) [with Distance = BNEuclidean; Rcpp::NumericMatrix = Rcpp::Matrix<14>; Rcpp::List = Rcpp::Vector<19>]':
kmknn.cpp:219:16:   required from here
kmknn.h:37:31: warning: 'Kmknn<BNEuclidean>::centers' will be initialized after [-Wreorder]
     const Rcpp::NumericMatrix centers;
                               ^
kmknn.h:33:20: warning:   'neighbor_queue Kmknn<BNEuclidean>::nearest' [-Wreorder]
     neighbor_queue nearest;
                    ^
kmknn.cpp:13:1: warning:   when initialized here [-Wreorder]
 Kmknn<Distance>::Kmknn(Rcpp::NumericMatrix ex, Rcpp::NumericMatrix cen, Rcpp::List info, bool warn_ties) : 
 ^
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c query_annoy.cpp -o query_annoy.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c query_hnsw.cpp -o query_hnsw.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c query_kmknn.cpp -o query_kmknn.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c query_vptree.cpp -o query_vptree.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c utils.cpp -o utils.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c vptree.cpp -o vptree.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o BiocNeighbors.dll tmp.def RcppExports.o annoy.o build_annoy.o build_hnsw.o build_vptree.o distances.o find_annoy.o find_hnsw.o find_kmknn.o find_vptree.o hnsw.o kmknn.o query_annoy.o query_hnsw.o query_kmknn.o query_vptree.o utils.o vptree.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/BiocNeighbors.buildbin-libdir/BiocNeighbors/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiocNeighbors' as BiocNeighbors_1.4.2.zip
* DONE (BiocNeighbors)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'BiocNeighbors' successfully unpacked and MD5 sums checked