Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R [S] T  U  V  W  X  Y  Z 

BioC 3.1: INSTALL report for simpleaffy on zin2

This page was generated on 2015-10-09 09:22:45 -0700 (Fri, 09 Oct 2015).

Package 910/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
simpleaffy 2.44.0
Crispin Miller
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/simpleaffy
Last Changed Rev: 102591 / Revision: 109384
Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: simpleaffy
Version: 2.44.0
Command: /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD INSTALL simpleaffy
StartedAt: 2015-10-08 18:06:20 -0700 (Thu, 08 Oct 2015)
EndedAt: 2015-10-08 18:06:29 -0700 (Thu, 08 Oct 2015)
EllapsedTime: 9.4 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD INSTALL simpleaffy
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.1-bioc/R/library’
* installing *source* package ‘simpleaffy’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c simpleaffy.c -o simpleaffy.o
simpleaffy.c: In function ‘bgmas’:
simpleaffy.c:440:5: warning: passing argument 1 of ‘REprintf’ from incompatible pointer type [enabled by default]
     if(gn >= ngrid) REprintf(stderr,"Really ouch! %d %d\n",gn,ends[gn]);
     ^
In file included from /home/biocbuild/bbs-3.1-bioc/R/include/R.h:47:0,
                 from simpleaffy.c:5:
/home/biocbuild/bbs-3.1-bioc/R/include/R_ext/Print.h:40:6: note: expected ‘const char *’ but argument is of type ‘struct _IO_FILE *’
 void REprintf(const char *, ...);
      ^
gcc -std=gnu99 -shared -L/home/biocbuild/bbs-3.1-bioc/R/lib -L/usr/local/lib -o simpleaffy.so simpleaffy.o -L/home/biocbuild/bbs-3.1-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.1-bioc/R/library/simpleaffy/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
* DONE (simpleaffy)