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BioC 3.1: INSTALL report for simpleaffy on moscato2

This page was generated on 2015-10-09 09:27:10 -0700 (Fri, 09 Oct 2015).

Package 910/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
simpleaffy 2.44.0
Crispin Miller
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/simpleaffy
Last Changed Rev: 102591 / Revision: 109384
Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: simpleaffy
Version: 2.44.0
Command: C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.1/bioc/src/contrib/simpleaffy_2.44.0.tar.gz && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch simpleaffy_2.44.0.tar.gz && rm simpleaffy_2.44.0.tar.gz
StartedAt: 2015-10-08 18:38:07 -0700 (Thu, 08 Oct 2015)
EndedAt: 2015-10-08 18:39:09 -0700 (Thu, 08 Oct 2015)
EllapsedTime: 62.5 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.1/bioc/src/contrib/simpleaffy_2.44.0.tar.gz && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch simpleaffy_2.44.0.tar.gz && rm simpleaffy_2.44.0.tar.gz
###
##############################################################################
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install for i386

* installing to library 'E:/biocbld/bbs-3.1-bioc/R/library'
* installing *source* package 'simpleaffy' ...
** libs
gcc -m32 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c simpleaffy.c -o simpleaffy.o
simpleaffy.c: In function 'bgmas':
simpleaffy.c:440:5: warning: passing argument 1 of 'REprintf' from incompatible pointer type [enabled by default]
E:/biocbld/BBS-3˜1.1-B/R/include/R_ext/Print.h:40:6: note: expected 'const char *' but argument is of type 'struct FILE *'
gcc -m32 -shared -s -static-libgcc -o simpleaffy.dll tmp.def simpleaffy.o -Ld:/RCompile/r-compiling/local/local320/lib/i386 -Ld:/RCompile/r-compiling/local/local320/lib -LE:/biocbld/BBS-3˜1.1-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-3.1-bioc/R/library/simpleaffy/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'

install for x64

* installing to library 'E:/biocbld/bbs-3.1-bioc/R/library'
* installing *source* package 'simpleaffy' ...
** libs
gcc -m64 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c simpleaffy.c -o simpleaffy.o
simpleaffy.c: In function 'bgmas':
simpleaffy.c:440:5: warning: passing argument 1 of 'REprintf' from incompatible pointer type [enabled by default]
E:/biocbld/BBS-3˜1.1-B/R/include/R_ext/Print.h:40:6: note: expected 'const char *' but argument is of type 'struct FILE *'
gcc -m64 -shared -s -static-libgcc -o simpleaffy.dll tmp.def simpleaffy.o -Ld:/RCompile/r-compiling/local/local320/lib/x64 -Ld:/RCompile/r-compiling/local/local320/lib -LE:/biocbld/BBS-3˜1.1-B/R/bin/x64 -lR
installing to E:/biocbld/bbs-3.1-bioc/R/library/simpleaffy/libs/x64
** testing if installed package can be loaded
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
* DONE (simpleaffy)