XVector 0.6.0
H. Pages
| Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/XVector | | Last Changed Rev: 95439 / Revision: 102249 | | Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | [ OK ] | OK | WARNINGS | OK |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | WARNINGS | OK |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | WARNINGS | OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.0/bioc/src/contrib/XVector_0.6.0.tar.gz && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch XVector_0.6.0.tar.gz && rm XVector_0.6.0.tar.gz
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 55369 100 55369 0 0 5040k 0 --:--:-- --:--:-- --:--:-- 26.4M
install for i386
* installing to library 'D:/biocbld/bbs-3.0-bioc/R/library'
* installing *source* package 'XVector' ...
** libs
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c Ocopy_byteblocks.c -o Ocopy_byteblocks.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c R_init_XVector.c -o R_init_XVector.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c SharedDouble_class.c -o SharedDouble_class.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c SharedInteger_class.c -o SharedInteger_class.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c SharedRaw_class.c -o SharedRaw_class.o
SharedRaw_class.c: In function 'SharedRaw_read_complexes_from_subscript':
SharedRaw_class.c:364:13: warning: variable 'src_tag' set but not used [-Wunused-but-set-variable]
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c SharedVector_class.c -o SharedVector_class.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c XRawList_comparison.c -o XRawList_comparison.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c XVectorList_class.c -o XVectorList_class.o
XVectorList_class.c: In function '_new_XRawList_from_CharAEAE':
XVectorList_class.c:466:33: warning: 'lkup_length' may be used uninitialized in this function [-Wuninitialized]
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c XVector_class.c -o XVector_class.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c slice_methods.c -o slice_methods.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c vector_copy.c -o vector_copy.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c view_summarization_methods.c -o view_summarization_methods.o
view_summarization_methods.c: In function 'get_which_min_from_Ints_holder':
view_summarization_methods.c:219:36: warning: 'cur_min' may be used uninitialized in this function [-Wuninitialized]
view_summarization_methods.c: In function 'get_which_min_from_Doubles_holder':
view_summarization_methods.c:246:36: warning: 'cur_min' may be used uninitialized in this function [-Wuninitialized]
view_summarization_methods.c: In function 'get_which_max_from_Ints_holder':
view_summarization_methods.c:269:36: warning: 'cur_max' may be used uninitialized in this function [-Wuninitialized]
view_summarization_methods.c: In function 'get_which_max_from_Doubles_holder':
view_summarization_methods.c:296:36: warning: 'cur_max' may be used uninitialized in this function [-Wuninitialized]
gcc -m32 -shared -s -static-libgcc -o XVector.dll tmp.def IRanges_stubs.o Ocopy_byteblocks.o R_init_XVector.o S4Vectors_stubs.o SharedDouble_class.o SharedInteger_class.o SharedRaw_class.o SharedVector_class.o XRawList_comparison.o XVectorList_class.o XVector_class.o slice_methods.o vector_copy.o view_summarization_methods.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-3˜1.0-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.0-bioc/R/library/XVector/libs/i386
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'toString' from package 'base' in package 'XVector'
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
install for x64
* installing to library 'D:/biocbld/bbs-3.0-bioc/R/library'
* installing *source* package 'XVector' ...
** libs
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c Ocopy_byteblocks.c -o Ocopy_byteblocks.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c R_init_XVector.c -o R_init_XVector.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c SharedDouble_class.c -o SharedDouble_class.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c SharedInteger_class.c -o SharedInteger_class.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c SharedRaw_class.c -o SharedRaw_class.o
SharedRaw_class.c: In function 'SharedRaw_read_complexes_from_subscript':
SharedRaw_class.c:364:13: warning: variable 'src_tag' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c SharedVector_class.c -o SharedVector_class.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c XRawList_comparison.c -o XRawList_comparison.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c XVectorList_class.c -o XVectorList_class.o
XVectorList_class.c: In function '_new_XRawList_from_CharAEAE':
XVectorList_class.c:466:33: warning: 'lkup_length' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c XVector_class.c -o XVector_class.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c slice_methods.c -o slice_methods.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c vector_copy.c -o vector_copy.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c view_summarization_methods.c -o view_summarization_methods.o
view_summarization_methods.c: In function 'get_which_min_from_Ints_holder':
view_summarization_methods.c:219:36: warning: 'cur_min' may be used uninitialized in this function [-Wuninitialized]
view_summarization_methods.c: In function 'get_which_min_from_Doubles_holder':
view_summarization_methods.c:246:36: warning: 'cur_min' may be used uninitialized in this function [-Wuninitialized]
view_summarization_methods.c: In function 'get_which_max_from_Ints_holder':
view_summarization_methods.c:269:36: warning: 'cur_max' may be used uninitialized in this function [-Wuninitialized]
view_summarization_methods.c: In function 'get_which_max_from_Doubles_holder':
view_summarization_methods.c:296:36: warning: 'cur_max' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -shared -s -static-libgcc -o XVector.dll tmp.def IRanges_stubs.o Ocopy_byteblocks.o R_init_XVector.o S4Vectors_stubs.o SharedDouble_class.o SharedInteger_class.o SharedRaw_class.o SharedVector_class.o XRawList_comparison.o XVectorList_class.o XVector_class.o slice_methods.o vector_copy.o view_summarization_methods.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-3˜1.0-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.0-bioc/R/library/XVector/libs/x64
** testing if installed package can be loaded
* DONE (XVector)