- Home
- Bioconductor 3.0
- Software Packages
- XVector
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("XVector")
In most cases, you don't need to download the package archive at all.
XVector
Representation and manpulation of external sequences
Bioconductor version: 3.0
Memory efficient S4 classes for storing sequences "externally" (behind an R external pointer, or on disk).
Author: H. Pages and P. Aboyoun
Maintainer: H. Pages <hpages at fhcrc.org>
Citation (from within R,
enter citation("XVector")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("XVector")
Documentation
| Reference Manual |
Details
| biocViews | DataRepresentation, Infrastructure, Software |
| Version | 0.6.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) |
| License | Artistic-2.0 |
| Depends | R (>= 2.8.0), methods, BiocGenerics(>= 0.11.3), S4Vectors(>= 0.2.0), IRanges(>= 1.99.26) |
| Imports | methods, BiocGenerics, S4Vectors, IRanges |
| LinkingTo | S4Vectors, IRanges |
| Suggests | Biostrings, drosophila2probe, RUnit |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | Biostrings, motifRG, Rsamtools, triplex |
| Imports Me | Biostrings, BSgenome, ChIPsim, CNEr, compEpiTools, DECIPHER, gcrma, GenomicRanges, Gviz, kebabs, motifRG, R453Plus1Toolbox, rtracklayer, TFBSTools, tracktables, VariantAnnotation |
| Suggests Me | IRanges |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | XVector_0.6.0.tar.gz |
| Windows Binary | XVector_0.6.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | XVector_0.6.0.tgz |
| Mac OS X 10.9 (Mavericks) | XVector_0.6.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!
Contact us: support.bioconductor.org
Hosting provided by Fred Hutchinson Cancer Research Center
Copyright © 2003 - 2015, Bioconductor
