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Package 188/467HostnameOS / ArchBUILDCHECKBUILD BIN
genomes 1.8.1
Chris Stubben
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/genomes
Last Changed Rev: 56692 / Revision: 59457
Last Changed Date: 2011-07-13 15:31:00 -0700 (Wed, 13 Jul 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: genomes
Version: 1.8.1
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings genomes_1.8.1.tar.gz
StartedAt: 2011-10-20 12:52:34 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 12:53:35 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 61.8 seconds
RetCode: 0
Status:  OK 
CheckDir: genomes.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/genomes.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘genomes/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘genomes’ version ‘1.8.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘genomes’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

genomes.Rcheck/00install.out:

* installing *source* package ‘genomes’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (genomes)

genomes.Rcheck/genomes-Ex.timings:

nameusersystemelapsed
acc2date 0.140 0.00812.636
doublingTime0.1680.0000.167
genomes-lines0.1800.0080.185
genomes-plot0.1080.0040.113
genomes-print0.1360.0000.161
genomes-subset0.0800.0040.085
genomes-summary0.0320.0000.032
genomes-update0.0040.0040.003
genomes0.1840.0040.189
genus0.2200.0160.235
image20.0760.0000.078
lenvs0.0240.0000.027
leuks0.1400.0000.143
like0.2040.0000.207
lproks0.2840.0080.302
plotby0.3000.0120.318
pub2date0.1240.0001.553
pubmed0.0920.0040.508
revhist 0.172 0.00412.539
species0.3120.0160.340
table20.0120.0040.015
taxid2names0.0080.0000.474
term2neighbor0.0480.0001.169
term2summary1.0920.0204.878
top0.3400.0000.344
virus0.0960.0000.828
year0.0680.0000.069