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Package 188/467HostnameOS / ArchBUILDCHECKBUILD BIN
genomes 1.8.1
Chris Stubben
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/genomes
Last Changed Rev: 56692 / Revision: 59457
Last Changed Date: 2011-07-13 15:31:00 -0700 (Wed, 13 Jul 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ WARNINGS ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: genomes
Version: 1.8.1
Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch genomes_1.8.1.tar.gz
StartedAt: 2011-10-20 14:34:27 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 14:35:28 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 61.5 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: genomes.Rcheck
Warnings: 1

Command output

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/genomes.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'genomes/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'genomes' version '1.8.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'genomes' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignette(s) without corresponding PDF:
   genome-tables.Rnw

* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'D:/biocbld/bbs-2.8-bioc/meat/genomes.Rcheck/00check.log'
for details

genomes.Rcheck/00install.out:

* installing *source* package 'genomes' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (genomes)

genomes.Rcheck/genomes-Ex.timings:

nameusersystemelapsed
acc2date 0.14 0.0110.31
doublingTime0.20.00.2
genomes-lines0.220.000.22
genomes-plot0.210.000.20
genomes-print0.140.000.15
genomes-subset0.090.000.09
genomes-summary0.020.000.01
genomes-update0.000.020.02
genomes0.150.000.16
genus0.220.000.22
image20.060.000.06
lenvs0.020.010.03
leuks0.140.000.14
like0.140.000.14
lproks0.420.000.42
plotby0.50.00.5
pub2date0.120.001.58
pubmed0.110.000.76
revhist 0.14 0.0212.03
species0.30.00.3
table20.010.000.01
taxid2names0.020.000.42
term2neighbor0.040.001.27
term2summary1.160.014.87
top0.300.000.32
virus0.090.000.78
year0.060.020.09