flowMerge 1.99.2
Greg Finak
| Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowMerge | | Last Changed Rev: 53230 / Revision: 53255 | | Last Changed Date: 2011-02-23 15:58:08 -0800 (Wed, 23 Feb 2011) |
| lamb2 | Linux (openSUSE 11.2) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | ERROR | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.4) / i386 | [ ERROR ] | skipped | skipped |
* checking for file 'flowMerge/DESCRIPTION' ... OK
* preparing 'flowMerge':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: flowClust
Loading required package: mnormt
Loading required package: ellipse
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: flowCore
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Attaching package: 'flowCore'
The following object(s) are masked from 'package:stats':
alias, filter
Attaching package: 'flowClust'
The following object(s) are masked from 'package:mvtnorm':
dmvt
The following object(s) are masked from 'package:graphics':
box
Loading required package: snow
Attaching package: 'snow'
The following object(s) are masked from 'package:base':
enquote
Loading required package: foreach
Loading required package: iterators
Loading required package: codetools
Attaching package: 'flowMerge'
The following object(s) are masked from 'package:snow':
checkForRemoteErrors
Using the multicore version of flowClust with 16 cores
Loading required package: doMC
Merged to 3 clusters
Merged to 2 clusters
Merged to 1 clusters
Updating model statistics
Updated model 1
Updated model 2
Updated model 3
Updated model 4
Merged to 3 clusters
Merged to 2 clusters
Merged to 1 clusters
Updating model statistics
Rule of identifying outliers: 90% quantile
Updated model 1
Rule of identifying outliers: 90% quantile
Updated model 2
Rule of identifying outliers: 90% quantile
Updated model 3
Rule of identifying outliers: 90% quantile
Updated model 4
Merged to 3 clusters
Merged to 2 clusters
Merged to 1 clusters
Updating model statistics
Rule of identifying outliers: 90% quantile
Updated model 1
Rule of identifying outliers: 90% quantile
Updated model 2
Rule of identifying outliers: 90% quantile
Updated model 3
Rule of identifying outliers: 90% quantile
Updated model 4
Rule of identifying outliers: 75% quantile
Rule of identifying outliers: 75% quantile
Using the multicore version of flowClust with 16 cores
Merged to 5 clusters
Merged to 4 clusters
Merged to 3 clusters
Merged to 2 clusters
Merged to 1 clusters
Updating model statistics
Updated model 1
Updated model 2
Updated model 3
Updated model 4
Updated model 5
Updated model 6
Rule of identifying outliers: 90% quantile
Rule of identifying outliers: 90% quantile
Merged to 5 clusters
Merged to 4 clusters
Merged to 3 clusters
Merged to 2 clusters
Merged to 1 clusters
Updating model statistics
Rule of identifying outliers: 90% quantile
Updated model 1
Rule of identifying outliers: 90% quantile
Updated model 2
Rule of identifying outliers: 90% quantile
Updated model 3
Rule of identifying outliers: 90% quantile
Updated model 4
Rule of identifying outliers: 90% quantile
Updated model 5
Rule of identifying outliers: 90% quantile
Updated model 6
Rule of identifying outliers: 90% quantile
Rule of identifying outliers: 90% quantile
Rule of identifying outliers: 90% quantile
Merged to 5 clusters
Merged to 4 clusters
Merged to 3 clusters
Merged to 2 clusters
Merged to 1 clusters
Updating model statistics
Rule of identifying outliers: 90% quantile
Updated model 1
Rule of identifying outliers: 90% quantile
Updated model 2
Rule of identifying outliers: 90% quantile
Updated model 3
Rule of identifying outliers: 90% quantile
Updated model 4
Rule of identifying outliers: 90% quantile
Updated model 5
Rule of identifying outliers: 90% quantile
Updated model 6
Rule of identifying outliers: 90% quantile
Error in texi2dvi(file = bft, pdf = TRUE, clean = FALSE, quiet = quiet) :
Running 'texi2dvi' on 'flowMerge.tex' failed.
LaTeX errors:
!pdfTeX error: pdflatex (file ./flowMerge-stage6.pdf): xpdf: reading PDF image
failed
==> Fatal error occurred, no output PDF file produced!
Calls: <Anonymous> -> texi2dvi
Execution halted