Package: flowMerge

Version: 1.99.2

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch flowMerge_1.99.2.tar.gz

StartedAt: 2011-02-24 19:11:02 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 19:13:20 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 137.4 seconds

RetCode: 0

Status:  OK

CheckDir: flowMerge.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.8-bioc/meat/flowMerge.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowMerge/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowMerge’ version ‘1.99.2’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘flowMerge’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘flowMerge’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: mnormt
Loading required package: ellipse
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: flowCore
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)

Attaching package: 'flowCore'

The following object(s) are masked from 'package:stats':

    alias, filter


Attaching package: 'flowClust'

The following object(s) are masked from 'package:mvtnorm':

    dmvt

The following object(s) are masked from 'package:graphics':

    box


Attaching package: 'snow'

The following object(s) are masked from 'package:base':

    enquote

Loading required package: iterators
Loading required package: codetools
Creating a new generic function for "merge" in "flowMerge"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (flowMerge)

name	user	system	elapsed
NENT	0.907	0.243	1.172
fitPiecewiseLinreg	0.723	0.214	0.840
flowClust.res	0.116	0.009	0.126
flowMerge-package	0.792	0.239	1.130
flowObj	0.746	0.253	0.909
map	0.009	0.001	0.009
merge-methods	0.723	0.246	0.858
merge	0.633	0.225	0.774
pFlowMerge	31.697	2.333	34.326
plot-methods	0.774	0.237	0.961
updateU	0.811	0.270	1.024