MLP 0.99.6
Tobias Verbeke
| Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MLP | | Last Changed Rev: 52563 / Revision: 53255 | | Last Changed Date: 2011-02-10 02:35:32 -0800 (Thu, 10 Feb 2011) |
| lamb2 | Linux (openSUSE 11.2) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | [ ERROR ] | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.4) / i386 | ERROR | skipped | skipped |
* checking for file 'MLP/DESCRIPTION' ... OK
* preparing 'MLP':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: MLP
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affy
Loading required package: plotrix
Loading required package: gplots
Loading required package: gtools
Loading required package: gdata
File type 'perl' not found or no open command associated with it.
File type 'perl' not found or no open command associated with it.
gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
gdata: Unable to load perl libaries needed by read.xls()
gdata: to support 'XLSX' (Excel 2007+) files.
gdata: Run the function 'installXLSXsupport()'
gdata: to automatically download and install the perl
gdata: libaries needed to support Excel XLS and XLSX formats.
Attaching package: 'gdata'
The following object(s) are masked from 'package:Biobase':
combine
The following object(s) are masked from 'package:utils':
object.size
Loading required package: caTools
Loading required package: bitops
Loading required package: grid
Attaching package: 'gplots'
The following object(s) are masked from 'package:plotrix':
plotCI
The following object(s) are masked from 'package:stats':
lowess
Loading required package: gmodels
Loading required package: limma
Loading required package: mouse4302mmentrezg.db
Loading required package: GO.db
Loading required package: DBI
Loading required package: org.Mm.eg.db
Loading required package: Rgraphviz
Loading required package: graph
Loading required package: GOstats
Loading required package: Category
Loading required package: annotate
Attaching package: 'annotate'
The following object(s) are masked from 'package:Rgraphviz':
toFile
Loading required package: mouse4302.db
Error: running 'texi2dvi' on 'UsingMLP.tex' failed
LaTeX errors:
ex:466: Package inputenc Error: Keyboard character used is undefined
(inputenc) in inputencoding `utf8'.
See the inputenc package documentation for explanation.
Type H <return> for immediate help
In addition: Warning messages:
1: running command 'C:\Windows\system32\cmd.exe /c ftype perl' had status 2
2: running command 'C:\Windows\system32\cmd.exe /c ftype perl' had status 2
3: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called 'mouse4302mmentrezg.db'
4: In fun(...) : Rgraphviz built with Graphviz version 2.20.3.
Found installed Graphviz version 2.25.20090912.445. This _may_ cause problems.
5: running command '"C:\PROGRA˜2\MIKTEX˜1.8\miktex\bin\texi2dvi.exe" --quiet --pdf "UsingMLP.tex" -I "D:/biocbld/bbs-2.8-bioc/R/share/texmf/tex/latex" -I "D:/biocbld/bbs-2.8-bioc/R/share/texmf/bibtex/bst"' had status 1
Execution halted