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Package 367/389HostnameOS / ArchBUILDCHECKBUILD BIN
Starr 1.4.4
Benedikt Zacher
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/Starr
Last Changed Rev: 47511 / Revision: 49923
Last Changed Date: 2010-06-17 04:57:38 -0700 (Thu, 17 Jun 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: Starr
Version: 1.4.4
Command: chmod a+r Starr -R && E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD build Starr
StartedAt: 2010-10-04 15:21:13 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 15:22:19 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 66.3 seconds
RetCode: 0
Status:  OK  
PackageFile: Starr_1.4.4.tar.gz
PackageFileSize: 1.227 MiB

Command output

* checking for file 'Starr/DESCRIPTION' ... OK
* preparing 'Starr':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* installing *source* package 'Starr' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
  making DLL ...
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB        -O3 -Wall  -std=gnu99 -c ahocorasick.c -o ahocorasick.o
ahocorasick.c: In function 'find_ac2':
ahocorasick.c:343: warning: 'root' is used uninitialized in this function
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB        -O3 -Wall  -std=gnu99 -c collect.c -o collect.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB        -O3 -Wall  -std=gnu99 -c rm_small_peak.c -o rm_small_peak.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB        -O3 -Wall  -std=gnu99 -c sort_by_genomic.c -o sort_by_genomic.o
gcc -shared -s -static-libgcc -o Starr.dll tmp.def ahocorasick.o collect.o rm_small_peak.o sort_by_genomic.o -lRzlib -LE:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to E:/biocbld/bbs-2.6-bioc/tmpdir/Rinst310482608/Starr/libs
  ... done
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RColorBrewer
Loading required package: limma
Loading required package: Matrix
Loading required package: lattice

Attaching package: 'Matrix'

The following object(s) are masked from 'package:base':

    det

Loading required package: grid

Attaching package: 'affy'

The following object(s) are masked from 'package:Ringo':

    probes

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Starr)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'Starr_1.4.4.tar.gz'