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Package 367/389HostnameOS / ArchBUILDCHECKBUILD BIN
Starr 1.4.4
Benedikt Zacher
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/Starr
Last Changed Rev: 47511 / Revision: 49923
Last Changed Date: 2010-06-17 04:57:38 -0700 (Thu, 17 Jun 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: Starr
Version: 1.4.4
Command: D:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings Starr_1.4.4.tar.gz
StartedAt: 2010-10-04 19:01:42 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 19:04:04 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 142.0 seconds
RetCode: 0
Status:  OK  
CheckDir: Starr.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'D:/biocbld/bbs-2.6-bioc/meat/Starr.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Starr/DESCRIPTION' ... OK
* this is package 'Starr' version '1.4.4'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Starr' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

Starr.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'Starr' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
  making DLL ...
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB        -O2 -Wall  -std=gnu99 -c ahocorasick.c -o ahocorasick.o
ahocorasick.c: In function 'find_ac2':
ahocorasick.c:352: warning: 'root' may be used uninitialized in this function
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB        -O2 -Wall  -std=gnu99 -c collect.c -o collect.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB        -O2 -Wall  -std=gnu99 -c rm_small_peak.c -o rm_small_peak.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB        -O2 -Wall  -std=gnu99 -c sort_by_genomic.c -o sort_by_genomic.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o Starr.dll tmp.def ahocorasick.o collect.o rm_small_peak.o sort_by_genomic.o -lRzlib -LD:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to D:/biocbld/bbs-2.6-bioc/meat/Starr.Rcheck/Starr/libs/x64
  ... done
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RColorBrewer
Loading required package: limma
Loading required package: Matrix
Loading required package: lattice

Attaching package: 'Matrix'

The following object(s) are masked from 'package:base':

    det

Loading required package: grid

Attaching package: 'affy'

The following object(s) are masked from 'package:Ringo':

    probes

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Starr)

Starr.Rcheck/Starr-Ex.timings:

nameusersystemelapsed
bpmapToProbeAnno000
cmarrt.ma000
cmarrt.peak000
correlationPlot0.050.000.05
densityscatter2.880.092.98
filterGenes000
getMeans000
getProfiles000
getRatio000
kde2dplot0.400.070.47
makeSplines000
normalize.Probes000
plot.Density0.860.050.91
plot.boxes2.410.112.52
plot.cmarrt000
plot.gcBias2.230.002.23
plot.image000
plot.ma4.470.094.58
plot.posBias5.640.035.67
plot.ratioScatter1.600.031.63
plot.scatter1.480.071.54
plotProfiles0.610.010.63
profileplot1.170.001.17
read.gffAnno000
readCelFile000
remap000