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Package 215/294HostnameOS / ArchBUILDCHECKBUILD BIN
ppiStats 1.8.0
Tony Chiang
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/ppiStats
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386 [ OK ] OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: ppiStats
Version: 1.8.0
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD build ppiStats
StartedAt: 2009-04-18 14:47:08 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 14:48:42 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 94.0 seconds
RetCode: 0
Status: OK
PackageFile: ppiStats_1.8.0.tar.gz
PackageFileSize: 1.104 MiB

Command output

* checking for file 'ppiStats/DESCRIPTION' ... OK
* preparing 'ppiStats':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'ppiStats' ...
** R
** inst
** preparing package for lazy loading
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: GOstats
Loading required package: graph
Loading required package: annotate
Loading required package: xtable
Loading required package: RBGL
Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: org.Sc.sgd.db
Loading required package: ppiData
Loading required package: Rgraphviz
Loading required package: grid

Attaching package: 'Rgraphviz'


	The following object(s) are masked from package:annotate :

	 toFile 

Loading required package: ScISI
Loading required package: apComplex
Loading required package: RpsiXML
Loading required package: XML

Attaching package: 'XML'


	The following object(s) are masked from package:graph :

	 addNode 

Loading required package: hypergraph

Attaching package: 'hypergraph'


	The following object(s) are masked from package:Rgraphviz :

	 head,
	 tail 


	The following object(s) are masked from package:xtable :

	 label,
	 label<- 


	The following object(s) are masked from package:AnnotationDbi :

	 head,
	 tail 


	The following object(s) are masked from package:utils :

	 head,
	 tail 

Loading required package: lattice
Loading required package: RColorBrewer
** help
 >>> Building/Updating help pages for package 'ppiStats'
     Formats: text html latex example 
  assessSymmetry                    text    html    latex   example
  bpMatrix                          text    html    latex   example
  calcInOutDegStats                 text    html    latex   example
  createSummaryTables               text    html    latex   example
  degreeEstimates                   text    html    latex   example
  estErrProbMethodOfMoments         text    html    latex   example
  estimateCCMErrorRates             text    html    latex   example
  estimatePPIErrorRates             text    html    latex   example
Note: removing empty section \examples in file 'findAdjacent.Rd'
  findAdjacent                      text    html    latex
  genBPGraph                        text    html    latex   example
Note: removing empty section \references in file 'hgParams.Rd'
Note: removing empty section \examples in file 'hgParams.Rd'
  hgParams                          text    html    latex
Note: removing empty section \references in file 'hgTests.Rd'
Note: removing empty section \examples in file 'hgTests.Rd'
  hgTests                           text    html    latex
  idProteinErrorType                text    html    latex   example
  idProteinType                     text    html    latex   example
  inOutScatterCharts                text    html    latex   example
  nullDistDoublyTestedEdges         text    html    latex   example
  separateExptBySize                text    html    latex
  twPERM                            text    html    latex   example
  viabilityCharts                   text    html    latex   example
** building package indices ...
* DONE (ppiStats)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'ppiStats_1.8.0.tar.gz'