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Package 215/294HostnameOS / ArchBUILDCHECKBUILD BIN
ppiStats 1.8.0
Tony Chiang
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/ppiStats
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: ppiStats
Version: 1.8.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes ppiStats_1.8.0.tar.gz
StartedAt: 2009-04-18 19:41:51 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 19:44:15 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 143.4 seconds
RetCode: 0
Status: OK
CheckDir: ppiStats.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/ppiStats.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'ppiStats/DESCRIPTION' ... OK
* this is package 'ppiStats' version '1.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ppiStats' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating ppiStats-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating ppiStats-manual.tex ... OK
* checking ppiStats-manual.tex using pdflatex ... OK

ppiStats.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/ppiStats.Rcheck


---------- Making package ppiStats ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  preparing package ppiStats for lazy loading
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: GOstats
Loading required package: graph
Loading required package: annotate
Loading required package: xtable
Loading required package: RBGL
Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: org.Sc.sgd.db
Loading required package: ppiData
Loading required package: Rgraphviz
Loading required package: grid

Attaching package: 'Rgraphviz'


	The following object(s) are masked from package:annotate :

	 toFile 

Loading required package: ScISI
Loading required package: apComplex
Loading required package: RpsiXML
Loading required package: XML

Attaching package: 'XML'


	The following object(s) are masked from package:graph :

	 addNode 

Loading required package: hypergraph

Attaching package: 'hypergraph'


	The following object(s) are masked from package:Rgraphviz :

	 head,
	 tail 


	The following object(s) are masked from package:xtable :

	 label,
	 label<- 


	The following object(s) are masked from package:AnnotationDbi :

	 head,
	 tail 


	The following object(s) are masked from package:utils :

	 head,
	 tail 

Loading required package: lattice
Loading required package: RColorBrewer
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'ppiStats'
     Formats: text html latex example chm 
  assessSymmetry                    text    html    latex   example chm
  bpMatrix                          text    html    latex   example chm
  calcInOutDegStats                 text    html    latex   example chm
  createSummaryTables               text    html    latex   example chm
  degreeEstimates                   text    html    latex   example chm
  estErrProbMethodOfMoments         text    html    latex   example chm
  estimateCCMErrorRates             text    html    latex   example chm
  estimatePPIErrorRates             text    html    latex   example chm
Note: removing empty section \examples in file 'findAdjacent.Rd'
Note: removing empty section \examples in file 'findAdjacent.Rd'
  findAdjacent                      text    html    latex           chm
  genBPGraph                        text    html    latex   example chm
Note: removing empty section \references in file 'hgParams.Rd'
Note: removing empty section \examples in file 'hgParams.Rd'
Note: removing empty section \references in file 'hgParams.Rd'
Note: removing empty section \examples in file 'hgParams.Rd'
  hgParams                          text    html    latex           chm
Note: removing empty section \references in file 'hgTests.Rd'
Note: removing empty section \examples in file 'hgTests.Rd'
Note: removing empty section \references in file 'hgTests.Rd'
Note: removing empty section \examples in file 'hgTests.Rd'
  hgTests                           text    html    latex           chm
  idProteinErrorType                text    html    latex   example chm
  idProteinType                     text    html    latex   example chm
  inOutScatterCharts                text    html    latex   example chm
  nullDistDoublyTestedEdges         text    html    latex   example chm
  separateExptBySize                text    html    latex           chm
  twPERM                            text    html    latex   example chm
  viabilityCharts                   text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\ppiStats.Rcheck\00_pkg_src\ppiStats\chm\ppiStats.chm


Compile time: 0 minutes, 0 seconds
20	Topics
46	Local links
2	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\ppiStats.Rcheck\00_pkg_src\ppiStats\chm\ppiStats.chm, 43,459 bytes
Compression decreased file by 29,251 bytes.
  adding MD5 sums

* DONE (ppiStats)