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Package 14/294HostnameOS / ArchBUILDCHECKBUILD BIN
affyPara 1.2.1
Markus Schmidberger
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/affyPara
Last Changed Rev: 36978 / Revision: 38965
Last Changed Date: 2009-01-27 09:28:12 -0800 (Tue, 27 Jan 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: affyPara
Version: 1.2.1
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes affyPara_1.2.1.tar.gz
StartedAt: 2009-04-18 17:57:31 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 17:58:34 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 62.1 seconds
RetCode: 0
Status: OK
CheckDir: affyPara.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/affyPara.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'affyPara/DESCRIPTION' ... OK
* this is package 'affyPara' version '1.2.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'affyPara' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating affyPara-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating affyPara-manual.tex ... OK
* checking affyPara-manual.tex using pdflatex ... OK

affyPara.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/affyPara.Rcheck


---------- Making package affyPara ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  preparing package affyPara for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: snow
Loading required package: vsn
Loading required package: lattice
Loading required package: limma
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'affyPara'
     Formats: text html latex example chm 
  affyParaIntern                    text    html    latex           chm
  bgcPara                           text    html    latex   example chm
  computeExprSetPara                text    html    latex   example chm
  distributeFiles                   text    html    latex   example chm
  mergeSplitObjects                 text    html    latex   example chm
  normalizeAffyBatchConstantPara    text    html    latex   example chm
  normalizeAffyBatchInvariantsetPar text    html    latex   example chm
  normalizeAffyBatchLoessPara       text    html    latex   example chm
  normalizeAffyBatchLoessParaIter   text    html    latex   example chm
  normalizeAffyBatchQuantilesPara   text    html    latex   example chm
  preproPara                        text    html    latex   example chm
  removeDistributedFiles            text    html    latex   example chm
  rmaPara                           text    html    latex   example chm
  split                             text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\affyPara.Rcheck\00_pkg_src\affyPara\chm\affyPara.chm


Compile time: 0 minutes, 2 seconds
15	Topics
51	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\affyPara.Rcheck\00_pkg_src\affyPara\chm\affyPara.chm, 36,117 bytes
Compression decreased file by 47,960 bytes.
  adding MD5 sums

* DONE (affyPara)