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Package 114/294HostnameOS / ArchBUILDCHECKBUILD BIN
GGBase 3.0.0
Vince Carey
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/GGBase
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64 [ OK ] OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: GGBase
Version: 3.0.0
Command: /home/biocbuild/bbs-2.3-bioc/R/bin/R CMD build GGBase
StartedAt: 2009-04-18 14:23:13 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 14:23:48 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 34.4 seconds
RetCode: 0
Status: OK
PackageFile: GGBase_3.0.0.tar.gz
PackageFileSize: 50.23 MiB

Command output

* checking for file 'GGBase/DESCRIPTION' ... OK
* preparing 'GGBase':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'GGBase' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c glm_test.c -o glm_test.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c glm_test_R.c -o glm_test_R.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c mla.c -o mla.o
mla.c: In function ‘wsum’:
mla.c:155: warning: unused variable ‘i’
gcc -std=gnu99 -shared -L/usr/local/lib64 -o GGBase.so glm_test.o glm_test_R.o mla.o   -L/home/biocbuild/bbs-2.3-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: GSEABase
Loading required package: AnnotationDbi
Loading required package: annotate
Loading required package: xtable
Loading required package: graph
Loading required package: snpMatrix
Loading required package: survival
Loading required package: splines
Loading required package: RSQLite
Loading required package: DBI
** help
 >>> Building/Updating help pages for package 'GGBase'
     Formats: text html latex example 
  casting                           text    html    latex   example
  gwSnpScreenResult-class           text    html    latex   example
  plot_EvG-methods                  text    html    latex   example
  smlSet-class                      text    html    latex   example
  snp.rhs.tests154                  text    html    latex   example
  snpLocs.Hs                        text    html    latex   example
  snpsNear                          text    html    latex   example
** building package indices ...
* DONE (GGBase)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
WARNING: directory 'GGBase/inst/extdata' is empty
* building 'GGBase_3.0.0.tar.gz'