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Package 97/260HostnameOS / ArchBUILDCHECKBUILD BIN
GenomeGraphs 1.0.1
Steffen Durinck
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/GenomeGraphs
Last Changed Rev: 33070 / Revision: 34573
Last Changed Date: 2008-08-05 20:03:36 -0700 (Tue, 05 Aug 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: GenomeGraphs
Version: 1.0.1
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD check GenomeGraphs_1.0.1.tar.gz
StartedAt: 2008-10-16 05:55:44 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 06:00:37 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 292.6 seconds
RetCode: 0
Status: OK
CheckDir: GenomeGraphs.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/GenomeGraphs.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'GenomeGraphs/DESCRIPTION' ... OK
* this is package 'GenomeGraphs' version '1.0.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GenomeGraphs' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating GenomeGraphs-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GenomeGraphs-manual.tex ... OK
* checking GenomeGraphs-manual.tex using pdflatex ... OK

GenomeGraphs.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/GenomeGraphs.Rcheck


---------- Making package GenomeGraphs ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package GenomeGraphs for lazy loading
Loading required package: biomaRt
Loading required package: RCurl
Loading required package: grid
  installing man source files
  installing indices
  not zipping data
  installing help
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \references
Note: removing empty section \references
 >>> Building/Updating help pages for package 'GenomeGraphs'
     Formats: text html latex example chm 
  BaseTrack-class                   text    html    latex   example chm
  DisplayPars-class                 text    html    latex   example chm
  DisplayPars                       text    html    latex   example chm
  ExonArray-class                   text    html    latex   example chm
  Gene-class                        text    html    latex   example chm
  GeneModel-class                   text    html    latex   example chm
  GeneRegion-class                  text    html    latex   example chm
  GenericArray-class                text    html    latex   example chm
  GenomeAxis-class                  text    html    latex   example chm
  HighlightRegion-class             text    html    latex   example chm
  Ideogram-class                    text    html    latex   example chm
  Legend-class                      text    html    latex   example chm
  MappedRead-class                  text    html    latex   example chm
  Segmentation-class                text    html    latex   example chm
  Title-class                       text    html    latex   example chm
  Transcript-class                  text    html    latex   example chm
  TranscriptRegion-class            text    html    latex   example chm
  cn                                text    html    latex   example chm
  drawGD                            text    html    latex           chm
  exonProbePos                      text    html    latex   example chm
  gdObject-class                    text    html    latex   example chm
  gdPlot                            text    html    latex   example chm
  getPar                            text    html    latex   example chm
  ideogramTab                       text    html    latex   example chm
  intensity                         text    html    latex   example chm
  probestart                        text    html    latex   example chm
  segEnd                            text    html    latex   example chm
  segStart                          text    html    latex   example chm
  segments                          text    html    latex   example chm
  setPar                            text    html    latex   example chm
  unrData                           text    html    latex   example chm
  unrNProbes                        text    html    latex   example chm
  unrPositions                      text    html    latex   example chm
  yeastCons1                        text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.2-bioc\meat\GenomeGraphs.Rcheck\00_pkg_src\GenomeGraphs\chm\GenomeGraphs.chm


Compile time: 0 minutes, 0 seconds
35	Topics
124	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.2-bioc\meat\GenomeGraphs.Rcheck\00_pkg_src\GenomeGraphs\chm\GenomeGraphs.chm, 43,705 bytes
Compression decreased file by 58,797 bytes.
  adding MD5 sums

* DONE (GenomeGraphs)