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Package 97/260HostnameOS / ArchBUILDCHECKBUILD BIN
GenomeGraphs 1.0.1
Steffen Durinck
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/GenomeGraphs
Last Changed Rev: 33070 / Revision: 34573
Last Changed Date: 2008-08-05 20:03:36 -0700 (Tue, 05 Aug 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK [ OK ]
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: GenomeGraphs
Version: 1.0.1
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check GenomeGraphs_1.0.1.tar.gz
StartedAt: 2008-10-16 04:19:46 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 04:23:56 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 250.7 seconds
RetCode: 0
Status: OK
CheckDir: GenomeGraphs.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/home/biocbuild/bbs-2.2-bioc/meat/GenomeGraphs.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'GenomeGraphs/DESCRIPTION' ... OK
* this is package 'GenomeGraphs' version '1.0.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GenomeGraphs' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating GenomeGraphs-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GenomeGraphs-manual.tex ... OK
* checking GenomeGraphs-manual.tex using pdflatex ... OK

GenomeGraphs.Rcheck/00install.out:

* Installing *source* package 'GenomeGraphs' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: biomaRt
Loading required package: RCurl
Loading required package: grid
** help
Note: removing empty section \examples
Note: removing empty section \references
 >>> Building/Updating help pages for package 'GenomeGraphs'
     Formats: text html latex example 
  BaseTrack-class                   text    html    latex   example
  DisplayPars-class                 text    html    latex   example
  DisplayPars                       text    html    latex   example
  ExonArray-class                   text    html    latex   example
  Gene-class                        text    html    latex   example
  GeneModel-class                   text    html    latex   example
  GeneRegion-class                  text    html    latex   example
  GenericArray-class                text    html    latex   example
  GenomeAxis-class                  text    html    latex   example
  HighlightRegion-class             text    html    latex   example
  Ideogram-class                    text    html    latex   example
  Legend-class                      text    html    latex   example
  MappedRead-class                  text    html    latex   example
  Segmentation-class                text    html    latex   example
  Title-class                       text    html    latex   example
  Transcript-class                  text    html    latex   example
  TranscriptRegion-class            text    html    latex   example
  cn                                text    html    latex   example
  drawGD                            text    html    latex
  exonProbePos                      text    html    latex   example
  gdObject-class                    text    html    latex   example
  gdPlot                            text    html    latex   example
  getPar                            text    html    latex   example
  ideogramTab                       text    html    latex   example
  intensity                         text    html    latex   example
  probestart                        text    html    latex   example
  segEnd                            text    html    latex   example
  segStart                          text    html    latex   example
  segments                          text    html    latex   example
  setPar                            text    html    latex   example
  unrData                           text    html    latex   example
  unrNProbes                        text    html    latex   example
  unrPositions                      text    html    latex   example
  yeastCons1                        text    html    latex   example
** building package indices ...
* DONE (GenomeGraphs)