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Package 8/260HostnameOS / ArchBUILDCHECKBUILD BIN
AffyCompatible 1.0.0
Martin Morgan
Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/AffyCompatible
Last Changed Rev: 31430 / Revision: 33132
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  ERROR  skipped 
wilson2 Linux (openSUSE 10.3) / x86_64 [ ERROR ] skipped 
wellington Linux (openSUSE 10.3) / i686  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
pitt Mac OS X Tiger (10.4.11) / i386  ERROR  skipped  skipped 
Package: AffyCompatible
Version: 1.0.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD build AffyCompatible
StartedAt: 2008-08-08 02:56:41 -0700 (Fri, 08 Aug 2008)
EndedAt: 2008-08-08 02:57:14 -0700 (Fri, 08 Aug 2008)
EllapsedTime: 33.5 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'AffyCompatible/DESCRIPTION' ... OK
* preparing 'AffyCompatible':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'AffyCompatible' ...
** R
** inst
** help
 >>> Building/Updating help pages for package 'AffyCompatible'
     Formats: text html latex example 
  AffyCompatible-class              text    html    latex   example
  AffyCompatible-package            text    html    latex
  NetAffxResource-class             text    html    latex   example
  NetAffxResource                   text    html    latex
  accessors-NetAffxResource         text    html    latex
  readArr                           text    html    latex   example
  readMage                          text    html    latex   example
  readNetAffx                       text    html    latex   example
  readXml                           text    html    latex   example
  xclass                            text    html    latex   example
  zzz-.TypedAssociation-class       text    html    latex
  zzz-ARRCompatibility-class        text    html    latex   example
  zzz-DTTCompatibility-class        text    html    latex   example
  zzz-NetAffxCompatibility-class    text    html    latex   example
** building package indices ...
* DONE (AffyCompatible)
* creating vignettes ... ERROR
Loading required package: XML
Loading required package: RCurl

Error: processing vignette 'MAGEAndARR.Rnw' failed with diagnostics:
 chunk 3 (label=readArr) 
Error : evaluation nested too deeply: infinite recursion / options(expressions=)?
Execution halted