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Package 8/260HostnameOS / ArchBUILDCHECKBUILD BIN
AffyCompatible 1.0.0
Martin Morgan
Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/AffyCompatible
Last Changed Rev: 31430 / Revision: 33132
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  ERROR  skipped 
wilson2 Linux (openSUSE 10.3) / x86_64  ERROR  skipped 
wellington Linux (openSUSE 10.3) / i686  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ ERROR ] skipped  skipped 
pitt Mac OS X Tiger (10.4.11) / i386  ERROR  skipped  skipped 
Package: AffyCompatible
Version: 1.0.0
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD build AffyCompatible
StartedAt: 2008-08-08 04:33:33 -0700 (Fri, 08 Aug 2008)
EndedAt: 2008-08-08 04:34:53 -0700 (Fri, 08 Aug 2008)
EllapsedTime: 80.3 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'AffyCompatible/DESCRIPTION' ... OK
* preparing 'AffyCompatible':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.2-bioc/tmpdir/Rinst423665371


---------- Making package AffyCompatible ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'AffyCompatible'
     Formats: text html latex example chm 
  AffyCompatible-class              text    html    latex   example chm
  AffyCompatible-package            text    html    latex           chm
  NetAffxResource-class             text    html    latex   example chm
  NetAffxResource                   text    html    latex           chm
  accessors-NetAffxResource         text    html    latex           chm
  readArr                           text    html    latex   example chm
  readMage                          text    html    latex   example chm
  readNetAffx                       text    html    latex   example chm
  readXml                           text    html    latex   example chm
  xclass                            text    html    latex   example chm
  zzz-.TypedAssociation-class       text    html    latex           chm
  zzz-ARRCompatibility-class        text    html    latex   example chm
  zzz-DTTCompatibility-class        text    html    latex   example chm
  zzz-NetAffxCompatibility-class    text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.2-bioc\meat\AffyCompatible\chm\AffyCompatible.chm





Compile time: 0 minutes, 11 seconds

15	Topics

2,129	Local links

1	Internet link

1	Graphic





Created e:\biocbld\bbs-2.2-bioc\meat\AffyCompatible\chm\AffyCompatible.chm, 103,853 bytes

Compression decreased file by 865,714 bytes.

  adding MD5 sums

* DONE (AffyCompatible)
* creating vignettes ... ERROR
Loading required package: XML
Loading required package: RCurl

Error: processing vignette 'MAGEAndARR.Rnw' failed with diagnostics:
 chunk 3 (label=readArr) 
Error : evaluation nested too deeply: infinite recursion / options(expressions=)?
Execution halted