triplex 1.0.10
Jiri Hon
| Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/triplex | | Last Changed Rev: 79331 / Revision: 81334 | | Last Changed Date: 2013-08-08 12:20:19 -0700 (Thu, 08 Aug 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | [ OK ] | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/triplex.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘triplex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘triplex’ version ‘1.0.10’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘triplex’ can be installed ... [21s/23s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [9s/9s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
* installing *source* package ‘triplex’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.12-bioc/R/include -DNDEBUG -I/usr/local/include -I"/home/biocbuild/bbs-2.12-bioc/R/library/Biostrings/include" -I"/home/biocbuild/bbs-2.12-bioc/R/library/IRanges/include" -fpic -g -O2 -Wall -c Biostrings_stubs.c -o Biostrings_stubs.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.12-bioc/R/include -DNDEBUG -I/usr/local/include -I"/home/biocbuild/bbs-2.12-bioc/R/library/Biostrings/include" -I"/home/biocbuild/bbs-2.12-bioc/R/library/IRanges/include" -fpic -g -O2 -Wall -c IRanges_stubs.c -o IRanges_stubs.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.12-bioc/R/include -DNDEBUG -I/usr/local/include -I"/home/biocbuild/bbs-2.12-bioc/R/library/Biostrings/include" -I"/home/biocbuild/bbs-2.12-bioc/R/library/IRanges/include" -fpic -g -O2 -Wall -c R_init_triplex.c -o R_init_triplex.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.12-bioc/R/include -DNDEBUG -I/usr/local/include -I"/home/biocbuild/bbs-2.12-bioc/R/library/Biostrings/include" -I"/home/biocbuild/bbs-2.12-bioc/R/library/IRanges/include" -fpic -g -O2 -Wall -c align.c -o align.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.12-bioc/R/include -DNDEBUG -I/usr/local/include -I"/home/biocbuild/bbs-2.12-bioc/R/library/Biostrings/include" -I"/home/biocbuild/bbs-2.12-bioc/R/library/IRanges/include" -fpic -g -O2 -Wall -c align_interface.c -o align_interface.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.12-bioc/R/include -DNDEBUG -I/usr/local/include -I"/home/biocbuild/bbs-2.12-bioc/R/library/Biostrings/include" -I"/home/biocbuild/bbs-2.12-bioc/R/library/IRanges/include" -fpic -g -O2 -Wall -c dl_list.c -o dl_list.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.12-bioc/R/include -DNDEBUG -I/usr/local/include -I"/home/biocbuild/bbs-2.12-bioc/R/library/Biostrings/include" -I"/home/biocbuild/bbs-2.12-bioc/R/library/IRanges/include" -fpic -g -O2 -Wall -c libtriplex.c -o libtriplex.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.12-bioc/R/include -DNDEBUG -I/usr/local/include -I"/home/biocbuild/bbs-2.12-bioc/R/library/Biostrings/include" -I"/home/biocbuild/bbs-2.12-bioc/R/library/IRanges/include" -fpic -g -O2 -Wall -c progress.c -o progress.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.12-bioc/R/include -DNDEBUG -I/usr/local/include -I"/home/biocbuild/bbs-2.12-bioc/R/library/Biostrings/include" -I"/home/biocbuild/bbs-2.12-bioc/R/library/IRanges/include" -fpic -g -O2 -Wall -c search.c -o search.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.12-bioc/R/include -DNDEBUG -I/usr/local/include -I"/home/biocbuild/bbs-2.12-bioc/R/library/Biostrings/include" -I"/home/biocbuild/bbs-2.12-bioc/R/library/IRanges/include" -fpic -g -O2 -Wall -c search_interface.c -o search_interface.o
gcc -std=gnu99 -shared -L/usr/local/lib -o triplex.so Biostrings_stubs.o IRanges_stubs.o R_init_triplex.o align.o align_interface.o dl_list.o libtriplex.o progress.o search.o search_interface.o -L/home/biocbuild/bbs-2.12-bioc/R/lib -lR
installing to /home/biocbuild/bbs-2.12-bioc/meat/triplex.Rcheck/triplex/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (triplex)