BioC 2.12: CHECK report for XDE on moscato2

Package: XDE

Version: 2.6.0

Command: rm -rf XDE.buildbin-libdir && mkdir XDE.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=XDE.buildbin-libdir XDE_2.6.0.tar.gz >XDE-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=XDE.buildbin-libdir --install="check:XDE-install.out" --force-multiarch --no-vignettes --timings XDE_2.6.0.tar.gz && mv XDE.buildbin-libdir/* XDE.Rcheck/ && rmdir XDE.buildbin-libdir

StartedAt: 2013-10-09 04:35:51 -0700 (Wed, 09 Oct 2013)

EndedAt: 2013-10-09 04:40:24 -0700 (Wed, 09 Oct 2013)

EllapsedTime: 272.6 seconds

RetCode: 0

Status:  OK

CheckDir: XDE.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/XDE.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'XDE/DESCRIPTION' ... OK
* this is package 'XDE' version '2.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  data/.commands.R
  data/.createLogFiles.R
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'XDE' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
$,XdeMcmc: warning in matrix(mcmc, nr = iterations(x), nc =
  length(studyNames(x)), byrow = byrow): partial argument match of 'nr'
  to 'nrow'
$,XdeMcmc: warning in matrix(mcmc, nr = iterations(x), nc =
  length(studyNames(x)), byrow = byrow): partial argument match of 'nc'
  to 'ncol'
$,XdeMcmc: warning in matrix(mcmc, nc = 1, byrow = TRUE): partial
  argument match of 'nc' to 'ncol'
$,XdeMcmc: warning in matrix(mcmc, nc = S * (S - 1)/2, byrow = TRUE):
  partial argument match of 'nc' to 'ncol'
$,XdeMcmc: warning in matrix(mcmc, nc = 18, nr = iterations(x), byrow =
  TRUE): partial argument match of 'nr' to 'nrow'
$,XdeMcmc: warning in matrix(mcmc, nc = 18, nr = iterations(x), byrow =
  TRUE): partial argument match of 'nc' to 'ncol'
computeGOF: no visible binding for global variable 'psi'
modelA_B_MIupdates: no visible binding for global variable 'x'
modelA_B_MIupdates: no visible binding for global variable 'd'
rupdateBDDeltaStar_HyperInverseWishart: no visible binding for global
  variable 'phenodata'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'E:/biocbld/bbs-2.12-bioc/meat/XDE.buildbin-libdir/XDE/libs/i386/XDE.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
File 'E:/biocbld/bbs-2.12-bioc/meat/XDE.buildbin-libdir/XDE/libs/x64/XDE.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console.  The detected symbols
are linked into the code but might come from libraries and not actually
be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [8s] OK
** running examples for arch 'x64' ... [9s] OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'doRUnit.R' [4s]
 [5s] OK
** running tests for arch 'x64'
  Running 'doRUnit.R' [5s]
 [5s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 3 notes.
See
  'E:/biocbld/bbs-2.12-bioc/meat/XDE.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'XDE' ...
** libs
g++ -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c Cholesky.cpp -o Cholesky.o
g++ -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c Matrix_v2.cpp -o Matrix_v2.o
Matrix_v2.cpp: In function 'void matrixMult(const std::vector<std::vector<double> >&, const std::vector<double>&, std::vector<double>&)':
Matrix_v2.cpp:244:7: warning: unused variable 'k' [-Wunused-variable]
Matrix_v2.cpp:246:9: warning: unused variable 'j' [-Wunused-variable]
g++ -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c Potential_v2.cpp -o Potential_v2.o
Potential_v2.cpp: In function 'double potentialDDeltaStar_HyperInverseWishart(int, const double*, const double*, const double*, const double*, const double*, int, int, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Potential_v2.cpp:308:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:310:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:316:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:321:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:322:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:328:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:329:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:330:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:335:61: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:336:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:345:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:347:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:356:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:364:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:366:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:369:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:371:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:374:38: warning: statement has no effect [-Wunused-value]
Potential_v2.cpp: In function 'double potentialOmega0(double, double, double)':
Potential_v2.cpp:876:19: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
g++ -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c Random_v2.cpp -o Random_v2.o
Random_v2.cpp: In member function 'int Random::Discrete(const std::vector<double>&)':
Random_v2.cpp:159:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'std::vector<std::vector<double> > Random::CorrelationStandardInverseWishartAlternativeParam(int, double)':
Random_v2.cpp:512:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:515:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'std::vector<std::vector<std::vector<double> > > Random::HyperInverseWishart(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Random_v2.cpp:548:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:551:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:557:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:558:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:571:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:585:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:586:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:587:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:588:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:590:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:591:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:594:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:595:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:598:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:599:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:608:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:610:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:625:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:627:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:675:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:677:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:693:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:695:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:705:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:706:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:726:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:728:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:740:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:741:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:746:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:747:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:749:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:750:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:752:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:753:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:760:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:761:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'std::vector<double> Random::GaussianGraphicalModel(const std::vector<double>&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Random_v2.cpp:790:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:807:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:812:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:821:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:834:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:835:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:836:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:837:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:840:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:841:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:844:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:845:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:848:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:849:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:863:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:864:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:877:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:884:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:889:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:894:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:899:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:901:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:913:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:918:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:923:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:928:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'std::vector<std::vector<double> > Random::MatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Random_v2.cpp:948:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:950:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:966:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:968:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:973:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:976:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:978:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:994:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1007:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1008:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1009:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1010:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1012:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1013:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1016:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1017:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1020:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1021:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1035:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1036:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1048:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1050:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1057:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1062:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1067:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1070:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1072:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1074:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1086:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1088:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1093:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1096:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1098:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1133:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1135:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1143:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1144:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'double Random::PotentialHyperInverseWishart(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<std::vector<std::vector<double> > >&)':
Random_v2.cpp:1183:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1188:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1196:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1197:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1199:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1200:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'double Random::PotentialGaussianGraphicalModel(const std::vector<double>&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<double>&)':
Random_v2.cpp:1225:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1232:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1236:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1240:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1241:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1244:59: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1251:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1258:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1265:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1267:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1271:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'double Random::PotentialMatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&)':
Random_v2.cpp:1297:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1299:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1310:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'double Random::PotentialMatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<std::vector<double> >&)':
Random_v2.cpp:1335:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1336:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1343:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1345:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1350:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1351:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1355:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1356:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1357:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1360:61: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1361:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1380:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1385:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1391:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1393:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1396:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1398:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'std::vector<int> Random::Permutation(int)':
Random_v2.cpp:1822:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'double Random::lnGamma(double)':
Random_v2.cpp:1847:10: warning: unused variable 'x' [-Wunused-variable]
g++ -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c Rinterface_v2.cpp -o Rinterface_v2.o
In file included from Update_v2.h:8:0,
                 from Rinterface_v2.cpp:2:
Random.h:19:0: warning: "PI" redefined [enabled by default]
E:/biocbld/BBS-2˜1.12-/R/include/R_ext/Constants.h:32:0: note: this is the location of the previous definition
g++ -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c Structure.cpp -o Structure.o
In file included from Structure.cpp:29:0:
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(const string&, const std::vector<Potential*>&)':
ReportPotential.h:32:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(double*, const std::vector<Potential*>&)':
ReportPotential.h:48:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportPotential.h: In member function 'virtual void ReportPotential::report(const Structure*)':
ReportPotential.h:69:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportPotential.h:78:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from Structure.cpp:30:0:
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(const string&, const std::vector<Update*>&)':
ReportAcceptance.h:32:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(double*, const std::vector<Update*>&)':
ReportAcceptance.h:48:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportAcceptance.h: In member function 'virtual void ReportAcceptance::report(const Structure*)':
ReportAcceptance.h:67:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportAcceptance.h:76:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from ReportProbDelta.h:9:0,
                 from Structure.cpp:31:
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*>&)':
PotentialSum.h:30:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialSum.h: In destructor 'virtual PotentialSum::˜PotentialSum()':
PotentialSum.h:41:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from Structure.cpp:31:0:
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(const string&, Structure*, int)':
ReportProbDelta.h:53:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(double*, Structure*, int)':
ReportProbDelta.h:85:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportProbDelta.h: In destructor 'virtual ReportProbDelta::˜ReportProbDelta()':
ReportProbDelta.h:96:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Structure.cpp: In member function 'void Structure::setParameterValues(std::string&)':
Structure.cpp:528:8: warning: unused variable 'c' [-Wunused-variable]
Structure.cpp: In member function 'void Structure::setNumberOfUpdates(std::string&, std::vector<int>&, std::vector<Update*>&) const':
Structure.cpp:1642:8: warning: unused variable 'nRead' [-Wunused-variable]
Structure.cpp:1668:12: warning: unused variable 'nRead' [-Wunused-variable]
Structure.cpp:1579:12: warning: unused variable 'c' [-Wunused-variable]
Structure.cpp: In member function 'ReportDiffexpressed* Structure::setReports(std::string&, int&, std::vector<Potential*>&, std::vector<Update*>&, std::vector<Report*>&, int)':
Structure.cpp:1728:12: warning: unused variable 'c' [-Wunused-variable]
g++ -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c Update_v2.cpp -o Update_v2.o
Update_v2.cpp: In function 'void updateOmega_HyperInverseWishart(unsigned int*, int*, std::vector<std::vector<std::vector<double> > >&, int, int, const double*, const double*, const double*, const double*, const double*, double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Update_v2.cpp:3919:10: warning: unused variable 'pot' [-Wunused-variable]
Update_v2.cpp: In function 'void updateDDeltaStar_HyperInverseWishart(unsigned int*, int*, double*, int, int, const int*, const double*, const int*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Update_v2.cpp:3973:10: warning: unused variable 'pot' [-Wunused-variable]
g++ -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c Utility_v2.cpp -o Utility_v2.o
Utility_v2.cpp: In function 'double nuGibbs(double*, int, int, const int*, double, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const int*, const double*, Random&, int)':
Utility_v2.cpp:221:12: warning: unused variable 'detPrior' [-Wunused-variable]
Utility_v2.cpp:228:12: warning: unused variable 'detPosterior' [-Wunused-variable]
Utility_v2.cpp: In function 'double DeltaGibbs(int, double*, int, int, const int*, double, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const int*, const double*, Random&, int)':
Utility_v2.cpp:303:9: warning: unused variable 's' [-Wunused-variable]
Utility_v2.cpp:328:12: warning: unused variable 'detPrior' [-Wunused-variable]
Utility_v2.cpp:334:12: warning: unused variable 'detPosterior' [-Wunused-variable]
Utility_v2.cpp: In function 'void updateMRF1perfect_onedelta(int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, double, Random&)':
Utility_v2.cpp:413:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:435:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:447:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp: In function 'double perfectMRF1_onedelta(int*, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, double, unsigned int*, int)':
Utility_v2.cpp:556:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:600:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp: In function 'void updateMRF2perfect_onedelta(int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, Random&)':
Utility_v2.cpp:635:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp: In function 'double perfectMRF2_onedelta(int*, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, unsigned int*, int)':
Utility_v2.cpp:723:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:760:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:764:6: warning: unused variable 'ngg' [-Wunused-variable]
Utility_v2.cpp: In function 'void updateMRF2perfect(int, int, int, int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, double, Random&)':
Utility_v2.cpp:793:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp: In function 'double perfectMRF2(int*, int, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, double, unsigned int*, int)':
Utility_v2.cpp:904:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:949:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:954:8: warning: unused variable 'ngg' [-Wunused-variable]
Utility_v2.cpp: In function 'double OmegaGibbs(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, int, int, const double*, const double*, const double*, const double*, const double*, std::vector<std::vector<std::vector<double> > >&, Random&, int)':
Utility_v2.cpp:1027:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1028:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1036:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1041:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1047:56: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1059:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1060:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp: In function 'double DeltaStarGibbs(const std::vector<int>&, const std::vector<std::vector<int> >&, int, int, const int*, double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const double*, const std::vector<std::vector<std::vector<double> > >&, Random&, int)':
Utility_v2.cpp:1096:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1101:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1104:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1107:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1115:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1129:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1133:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1135:59: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1238:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1240:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1242:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1258:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1260:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1262:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1409:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1458:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1460:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1463:33: warning: variable 'itextra' set but not used [-Wunused-but-set-variable]
Utility_v2.cpp:1501:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1563:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1565:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1600:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1602:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1653:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1693:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1713:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1779:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp: In function 'void inverseTransformOmega(const std::vector<std::vector<std::vector<double> > >&, double*)':
Utility_v2.cpp:1875:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1877:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c diffExpressed_main.cpp -o diffExpressed_main.o
In file included from diffExpressed_main.cpp:16:0:
Random.h:19:0: warning: "PI" redefined [enabled by default]
E:/biocbld/BBS-2˜1.12-/R/include/R_ext/Constants.h:32:0: note: this is the location of the previous definition
In file included from diffExpressed_main.cpp:22:0:
PotentialX.h: In destructor 'virtual PotentialX::˜PotentialX()':
PotentialX.h:44:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialX.h: In member function 'virtual double PotentialX::potential(Random&) const':
PotentialX.h:64:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:31:0:
PotentialSigma2.h: In destructor 'virtual PotentialSigma2::˜PotentialSigma2()':
PotentialSigma2.h:44:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialSigma2.h: In member function 'virtual double PotentialSigma2::potential(Random&) const':
PotentialSigma2.h:64:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:32:0:
PotentialPhi.h: In destructor 'virtual PotentialPhi::˜PotentialPhi()':
PotentialPhi.h:44:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialPhi.h: In member function 'virtual double PotentialPhi::potential(Random&) const':
PotentialPhi.h:64:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:33:0:
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*>&)':
PotentialSum.h:30:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialSum.h: In destructor 'virtual PotentialSum::˜PotentialSum()':
PotentialSum.h:41:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:41:0:
UpdateDeltaMH.h: In constructor 'UpdateDeltaMH::UpdateDeltaMH(Structure*, int)':
UpdateDeltaMH.h:47:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateDeltaMH.h: In destructor 'virtual UpdateDeltaMH::˜UpdateDeltaMH()':
UpdateDeltaMH.h:59:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from UpdateSigma2MH.h:4:0,
                 from diffExpressed_main.cpp:43:
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:50:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h:53:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:76:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*>&, const std::vector<double*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:124:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h:127:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h:130:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:159:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h:162:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h: In member function 'virtual int UpdateMultiplicativePositive::update(Random&)':
UpdateMultiplicativePositive.h:213:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:43:0:
UpdateSigma2MH.h: In constructor 'UpdateSigma2MH::UpdateSigma2MH(Structure*, double)':
UpdateSigma2MH.h:49:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateSigma2MH.h: In destructor 'virtual UpdateSigma2MH::˜UpdateSigma2MH()':
UpdateSigma2MH.h:61:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateSigma2MH.h: In member function 'virtual void UpdateSigma2MH::setEpsilon(double)':
UpdateSigma2MH.h:71:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateSigma2MH.h: In member function 'virtual int UpdateSigma2MH::update(Random&)':
UpdateSigma2MH.h:96:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:44:0:
UpdateTMH.h: In constructor 'UpdateTMH::UpdateTMH(Structure*, const Potential*, double)':
UpdateTMH.h:48:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateTMH.h: In destructor 'virtual UpdateTMH::˜UpdateTMH()':
UpdateTMH.h:60:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateTMH.h: In member function 'virtual int UpdateTMH::update(Random&)':
UpdateTMH.h:84:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:45:0:
UpdateLMH.h: In constructor 'UpdateLMH::UpdateLMH(Structure*, const Potential*, double)':
UpdateLMH.h:49:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateLMH.h: In destructor 'virtual UpdateLMH::˜UpdateLMH()':
UpdateLMH.h:61:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateLMH.h: In member function 'virtual void UpdateLMH::setEpsilon(double)':
UpdateLMH.h:73:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateLMH.h: In member function 'virtual int UpdateLMH::update(Random&)':
UpdateLMH.h:99:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:46:0:
UpdatePhiMH.h: In constructor 'UpdatePhiMH::UpdatePhiMH(Structure*, double)':
UpdatePhiMH.h:45:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdatePhiMH.h: In destructor 'virtual UpdatePhiMH::˜UpdatePhiMH()':
UpdatePhiMH.h:57:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdatePhiMH.h: In member function 'virtual void UpdatePhiMH::setEpsilon(double)':
UpdatePhiMH.h:69:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdatePhiMH.h: In member function 'virtual int UpdatePhiMH::update(Random&)':
UpdatePhiMH.h:96:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:47:0:
UpdateThetaMH.h: In constructor 'UpdateThetaMH::UpdateThetaMH(Structure*, const Potential*, double)':
UpdateThetaMH.h:49:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateThetaMH.h: In destructor 'virtual UpdateThetaMH::˜UpdateThetaMH()':
UpdateThetaMH.h:61:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateThetaMH.h: In member function 'virtual int UpdateThetaMH::update(Random&)':
UpdateThetaMH.h:85:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:48:0:
UpdateLambdaMH.h: In constructor 'UpdateLambdaMH::UpdateLambdaMH(Structure*, const Potential*, double)':
UpdateLambdaMH.h:47:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateLambdaMH.h: In destructor 'virtual UpdateLambdaMH::˜UpdateLambdaMH()':
UpdateLambdaMH.h:59:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateLambdaMH.h: In member function 'virtual int UpdateLambdaMH::update(Random&)':
UpdateLambdaMH.h:83:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:143:0:
PotentialFunction.h: In function 'void xdeLIN_main(int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, int*, char**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*)':
PotentialFunction.h:55:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
diffExpressed_main.cpp:202:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
diffExpressed_main.cpp:217:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
diffExpressed_main.cpp:224:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
diffExpressed_main.cpp:227:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m32 -shared -s -static-libgcc -o XDE.dll tmp.def Cholesky.o Matrix_v2.o Potential_v2.o Random_v2.o Rinterface_v2.o Structure.o Update_v2.o Utility_v2.o diffExpressed_main.o -lm -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/XDE.buildbin-libdir/XDE/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'pairs' from package 'graphics' in package 'XDE'
Creating a generic function for 'plot' from package 'graphics' in package 'XDE'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'XDE' ...
** libs
g++ -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c Cholesky.cpp -o Cholesky.o
g++ -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c Matrix_v2.cpp -o Matrix_v2.o
Matrix_v2.cpp: In function 'void matrixMult(const std::vector<std::vector<double> >&, const std::vector<double>&, std::vector<double>&)':
Matrix_v2.cpp:244:7: warning: unused variable 'k' [-Wunused-variable]
Matrix_v2.cpp:246:9: warning: unused variable 'j' [-Wunused-variable]
g++ -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c Potential_v2.cpp -o Potential_v2.o
Potential_v2.cpp: In function 'double potentialDDeltaStar_HyperInverseWishart(int, const double*, const double*, const double*, const double*, const double*, int, int, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Potential_v2.cpp:308:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:310:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:316:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:321:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:322:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:328:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:329:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:330:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:335:61: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:336:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:345:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:347:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:356:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:364:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:366:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:369:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:371:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:374:38: warning: statement has no effect [-Wunused-value]
Potential_v2.cpp: In function 'double potentialOmega0(double, double, double)':
Potential_v2.cpp:876:19: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
g++ -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c Random_v2.cpp -o Random_v2.o
Random_v2.cpp: In member function 'int Random::Discrete(const std::vector<double>&)':
Random_v2.cpp:159:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'std::vector<std::vector<double> > Random::CorrelationStandardInverseWishartAlternativeParam(int, double)':
Random_v2.cpp:512:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:515:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'std::vector<std::vector<std::vector<double> > > Random::HyperInverseWishart(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Random_v2.cpp:548:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:551:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:557:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:558:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:571:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:585:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:586:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:587:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:588:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:590:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:591:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:594:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:595:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:598:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:599:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:608:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:610:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:625:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:627:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:675:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:677:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:693:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:695:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:705:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:706:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:726:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:728:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:740:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:741:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:746:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:747:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:749:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:750:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:752:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:753:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:760:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:761:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'std::vector<double> Random::GaussianGraphicalModel(const std::vector<double>&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Random_v2.cpp:790:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:807:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:812:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:821:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:834:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:835:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:836:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:837:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:840:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:841:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:844:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:845:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:848:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:849:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:863:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:864:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:877:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:884:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:889:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:894:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:899:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:901:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:913:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:918:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:923:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:928:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'std::vector<std::vector<double> > Random::MatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Random_v2.cpp:948:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:950:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:966:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:968:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:973:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:976:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:978:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:994:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1007:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1008:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1009:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1010:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1012:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1013:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1016:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1017:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1020:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1021:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1035:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1036:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1048:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1050:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1057:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1062:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1067:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1070:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1072:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1074:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1086:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1088:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1093:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1096:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1098:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1133:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1135:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1143:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1144:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'double Random::PotentialHyperInverseWishart(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<std::vector<std::vector<double> > >&)':
Random_v2.cpp:1183:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1188:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1196:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1197:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1199:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1200:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'double Random::PotentialGaussianGraphicalModel(const std::vector<double>&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<double>&)':
Random_v2.cpp:1225:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1232:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1236:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1240:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1241:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1244:59: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1251:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1258:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1265:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1267:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1271:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'double Random::PotentialMatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&)':
Random_v2.cpp:1297:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1299:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1310:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'double Random::PotentialMatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<std::vector<double> >&)':
Random_v2.cpp:1335:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1336:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1343:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1345:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1350:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1351:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1355:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1356:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1357:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1360:61: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1361:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1380:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1385:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1391:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1393:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1396:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1398:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'std::vector<int> Random::Permutation(int)':
Random_v2.cpp:1822:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'double Random::lnGamma(double)':
Random_v2.cpp:1847:10: warning: unused variable 'x' [-Wunused-variable]
g++ -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c Rinterface_v2.cpp -o Rinterface_v2.o
In file included from Update_v2.h:8:0,
                 from Rinterface_v2.cpp:2:
Random.h:19:0: warning: "PI" redefined [enabled by default]
E:/biocbld/BBS-2˜1.12-/R/include/R_ext/Constants.h:32:0: note: this is the location of the previous definition
g++ -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c Structure.cpp -o Structure.o
In file included from Structure.cpp:29:0:
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(const string&, const std::vector<Potential*>&)':
ReportPotential.h:32:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(double*, const std::vector<Potential*>&)':
ReportPotential.h:48:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportPotential.h: In member function 'virtual void ReportPotential::report(const Structure*)':
ReportPotential.h:69:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportPotential.h:78:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from Structure.cpp:30:0:
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(const string&, const std::vector<Update*>&)':
ReportAcceptance.h:32:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(double*, const std::vector<Update*>&)':
ReportAcceptance.h:48:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportAcceptance.h: In member function 'virtual void ReportAcceptance::report(const Structure*)':
ReportAcceptance.h:67:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportAcceptance.h:76:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from ReportProbDelta.h:9:0,
                 from Structure.cpp:31:
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*>&)':
PotentialSum.h:30:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialSum.h: In destructor 'virtual PotentialSum::˜PotentialSum()':
PotentialSum.h:41:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from Structure.cpp:31:0:
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(const string&, Structure*, int)':
ReportProbDelta.h:53:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(double*, Structure*, int)':
ReportProbDelta.h:85:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportProbDelta.h: In destructor 'virtual ReportProbDelta::˜ReportProbDelta()':
ReportProbDelta.h:96:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Structure.cpp: In member function 'void Structure::setParameterValues(std::string&)':
Structure.cpp:528:8: warning: unused variable 'c' [-Wunused-variable]
Structure.cpp: In member function 'void Structure::setNumberOfUpdates(std::string&, std::vector<int>&, std::vector<Update*>&) const':
Structure.cpp:1642:8: warning: unused variable 'nRead' [-Wunused-variable]
Structure.cpp:1668:12: warning: unused variable 'nRead' [-Wunused-variable]
Structure.cpp:1579:12: warning: unused variable 'c' [-Wunused-variable]
Structure.cpp: In member function 'ReportDiffexpressed* Structure::setReports(std::string&, int&, std::vector<Potential*>&, std::vector<Update*>&, std::vector<Report*>&, int)':
Structure.cpp:1728:12: warning: unused variable 'c' [-Wunused-variable]
g++ -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c Update_v2.cpp -o Update_v2.o
Update_v2.cpp: In function 'void updateOmega_HyperInverseWishart(unsigned int*, int*, std::vector<std::vector<std::vector<double> > >&, int, int, const double*, const double*, const double*, const double*, const double*, double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Update_v2.cpp:3919:10: warning: unused variable 'pot' [-Wunused-variable]
Update_v2.cpp: In function 'void updateDDeltaStar_HyperInverseWishart(unsigned int*, int*, double*, int, int, const int*, const double*, const int*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Update_v2.cpp:3973:10: warning: unused variable 'pot' [-Wunused-variable]
g++ -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c Utility_v2.cpp -o Utility_v2.o
Utility_v2.cpp: In function 'double nuGibbs(double*, int, int, const int*, double, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const int*, const double*, Random&, int)':
Utility_v2.cpp:221:12: warning: unused variable 'detPrior' [-Wunused-variable]
Utility_v2.cpp:228:12: warning: unused variable 'detPosterior' [-Wunused-variable]
Utility_v2.cpp: In function 'double DeltaGibbs(int, double*, int, int, const int*, double, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const int*, const double*, Random&, int)':
Utility_v2.cpp:303:9: warning: unused variable 's' [-Wunused-variable]
Utility_v2.cpp:328:12: warning: unused variable 'detPrior' [-Wunused-variable]
Utility_v2.cpp:334:12: warning: unused variable 'detPosterior' [-Wunused-variable]
Utility_v2.cpp: In function 'void updateMRF1perfect_onedelta(int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, double, Random&)':
Utility_v2.cpp:413:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:435:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:447:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp: In function 'double perfectMRF1_onedelta(int*, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, double, unsigned int*, int)':
Utility_v2.cpp:556:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:600:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp: In function 'void updateMRF2perfect_onedelta(int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, Random&)':
Utility_v2.cpp:635:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp: In function 'double perfectMRF2_onedelta(int*, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, unsigned int*, int)':
Utility_v2.cpp:723:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:760:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:764:6: warning: unused variable 'ngg' [-Wunused-variable]
Utility_v2.cpp: In function 'void updateMRF2perfect(int, int, int, int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, double, Random&)':
Utility_v2.cpp:793:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp: In function 'double perfectMRF2(int*, int, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, double, unsigned int*, int)':
Utility_v2.cpp:904:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:949:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:954:8: warning: unused variable 'ngg' [-Wunused-variable]
Utility_v2.cpp: In function 'double OmegaGibbs(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, int, int, const double*, const double*, const double*, const double*, const double*, std::vector<std::vector<std::vector<double> > >&, Random&, int)':
Utility_v2.cpp:1027:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1028:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1036:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1041:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1047:56: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1059:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1060:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp: In function 'double DeltaStarGibbs(const std::vector<int>&, const std::vector<std::vector<int> >&, int, int, const int*, double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const double*, const std::vector<std::vector<std::vector<double> > >&, Random&, int)':
Utility_v2.cpp:1096:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1101:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1104:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1107:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1115:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1129:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1133:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1135:59: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1238:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1240:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1242:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1258:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1260:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1262:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1409:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1458:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1460:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1463:33: warning: variable 'itextra' set but not used [-Wunused-but-set-variable]
Utility_v2.cpp:1501:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1563:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1565:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1600:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1602:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1653:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1693:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1713:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1779:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp: In function 'void inverseTransformOmega(const std::vector<std::vector<std::vector<double> > >&, double*)':
Utility_v2.cpp:1875:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1877:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c diffExpressed_main.cpp -o diffExpressed_main.o
In file included from diffExpressed_main.cpp:16:0:
Random.h:19:0: warning: "PI" redefined [enabled by default]
E:/biocbld/BBS-2˜1.12-/R/include/R_ext/Constants.h:32:0: note: this is the location of the previous definition
In file included from diffExpressed_main.cpp:22:0:
PotentialX.h: In destructor 'virtual PotentialX::˜PotentialX()':
PotentialX.h:44:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialX.h: In member function 'virtual double PotentialX::potential(Random&) const':
PotentialX.h:64:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:31:0:
PotentialSigma2.h: In destructor 'virtual PotentialSigma2::˜PotentialSigma2()':
PotentialSigma2.h:44:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialSigma2.h: In member function 'virtual double PotentialSigma2::potential(Random&) const':
PotentialSigma2.h:64:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:32:0:
PotentialPhi.h: In destructor 'virtual PotentialPhi::˜PotentialPhi()':
PotentialPhi.h:44:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialPhi.h: In member function 'virtual double PotentialPhi::potential(Random&) const':
PotentialPhi.h:64:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:33:0:
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*>&)':
PotentialSum.h:30:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialSum.h: In destructor 'virtual PotentialSum::˜PotentialSum()':
PotentialSum.h:41:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:41:0:
UpdateDeltaMH.h: In constructor 'UpdateDeltaMH::UpdateDeltaMH(Structure*, int)':
UpdateDeltaMH.h:47:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateDeltaMH.h: In destructor 'virtual UpdateDeltaMH::˜UpdateDeltaMH()':
UpdateDeltaMH.h:59:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from UpdateSigma2MH.h:4:0,
                 from diffExpressed_main.cpp:43:
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:50:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h:53:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:76:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*>&, const std::vector<double*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:124:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h:127:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h:130:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:159:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h:162:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h: In member function 'virtual int UpdateMultiplicativePositive::update(Random&)':
UpdateMultiplicativePositive.h:213:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:43:0:
UpdateSigma2MH.h: In constructor 'UpdateSigma2MH::UpdateSigma2MH(Structure*, double)':
UpdateSigma2MH.h:49:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateSigma2MH.h: In destructor 'virtual UpdateSigma2MH::˜UpdateSigma2MH()':
UpdateSigma2MH.h:61:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateSigma2MH.h: In member function 'virtual void UpdateSigma2MH::setEpsilon(double)':
UpdateSigma2MH.h:71:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateSigma2MH.h: In member function 'virtual int UpdateSigma2MH::update(Random&)':
UpdateSigma2MH.h:96:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:44:0:
UpdateTMH.h: In constructor 'UpdateTMH::UpdateTMH(Structure*, const Potential*, double)':
UpdateTMH.h:48:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateTMH.h: In destructor 'virtual UpdateTMH::˜UpdateTMH()':
UpdateTMH.h:60:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateTMH.h: In member function 'virtual int UpdateTMH::update(Random&)':
UpdateTMH.h:84:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:45:0:
UpdateLMH.h: In constructor 'UpdateLMH::UpdateLMH(Structure*, const Potential*, double)':
UpdateLMH.h:49:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateLMH.h: In destructor 'virtual UpdateLMH::˜UpdateLMH()':
UpdateLMH.h:61:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateLMH.h: In member function 'virtual void UpdateLMH::setEpsilon(double)':
UpdateLMH.h:73:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateLMH.h: In member function 'virtual int UpdateLMH::update(Random&)':
UpdateLMH.h:99:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:46:0:
UpdatePhiMH.h: In constructor 'UpdatePhiMH::UpdatePhiMH(Structure*, double)':
UpdatePhiMH.h:45:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdatePhiMH.h: In destructor 'virtual UpdatePhiMH::˜UpdatePhiMH()':
UpdatePhiMH.h:57:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdatePhiMH.h: In member function 'virtual void UpdatePhiMH::setEpsilon(double)':
UpdatePhiMH.h:69:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdatePhiMH.h: In member function 'virtual int UpdatePhiMH::update(Random&)':
UpdatePhiMH.h:96:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:47:0:
UpdateThetaMH.h: In constructor 'UpdateThetaMH::UpdateThetaMH(Structure*, const Potential*, double)':
UpdateThetaMH.h:49:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateThetaMH.h: In destructor 'virtual UpdateThetaMH::˜UpdateThetaMH()':
UpdateThetaMH.h:61:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateThetaMH.h: In member function 'virtual int UpdateThetaMH::update(Random&)':
UpdateThetaMH.h:85:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:48:0:
UpdateLambdaMH.h: In constructor 'UpdateLambdaMH::UpdateLambdaMH(Structure*, const Potential*, double)':
UpdateLambdaMH.h:47:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateLambdaMH.h: In destructor 'virtual UpdateLambdaMH::˜UpdateLambdaMH()':
UpdateLambdaMH.h:59:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateLambdaMH.h: In member function 'virtual int UpdateLambdaMH::update(Random&)':
UpdateLambdaMH.h:83:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:143:0:
PotentialFunction.h: In function 'void xdeLIN_main(int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, int*, char**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*)':
PotentialFunction.h:55:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
diffExpressed_main.cpp:202:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
diffExpressed_main.cpp:217:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
diffExpressed_main.cpp:224:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
diffExpressed_main.cpp:227:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m64 -shared -s -static-libgcc -o XDE.dll tmp.def Cholesky.o Matrix_v2.o Potential_v2.o Random_v2.o Rinterface_v2.o Structure.o Update_v2.o Utility_v2.o diffExpressed_main.o -lm -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/XDE.buildbin-libdir/XDE/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'XDE' as XDE_2.6.0.zip
* DONE (XDE)