install for i386
* installing *source* package 'XDE' ...
** libs
g++ -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c Cholesky.cpp -o Cholesky.o
g++ -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c Matrix_v2.cpp -o Matrix_v2.o
Matrix_v2.cpp: In function 'void matrixMult(const std::vector<std::vector<double> >&, const std::vector<double>&, std::vector<double>&)':
Matrix_v2.cpp:244:7: warning: unused variable 'k' [-Wunused-variable]
Matrix_v2.cpp:246:9: warning: unused variable 'j' [-Wunused-variable]
g++ -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c Potential_v2.cpp -o Potential_v2.o
Potential_v2.cpp: In function 'double potentialDDeltaStar_HyperInverseWishart(int, const double*, const double*, const double*, const double*, const double*, int, int, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Potential_v2.cpp:308:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:310:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:316:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:321:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:322:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:328:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:329:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:330:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:335:61: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:336:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:345:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:347:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:356:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:364:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:366:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:369:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:371:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:374:38: warning: statement has no effect [-Wunused-value]
Potential_v2.cpp: In function 'double potentialOmega0(double, double, double)':
Potential_v2.cpp:876:19: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
g++ -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c Random_v2.cpp -o Random_v2.o
Random_v2.cpp: In member function 'int Random::Discrete(const std::vector<double>&)':
Random_v2.cpp:159:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'std::vector<std::vector<double> > Random::CorrelationStandardInverseWishartAlternativeParam(int, double)':
Random_v2.cpp:512:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:515:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'std::vector<std::vector<std::vector<double> > > Random::HyperInverseWishart(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Random_v2.cpp:548:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:551:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:557:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:558:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:571:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:585:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:586:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:587:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:588:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:590:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:591:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:594:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:595:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:598:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:599:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:608:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:610:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:625:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:627:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:675:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:677:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:693:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:695:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:705:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:706:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:726:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:728:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:740:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:741:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:746:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:747:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:749:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:750:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:752:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:753:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:760:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:761:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'std::vector<double> Random::GaussianGraphicalModel(const std::vector<double>&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Random_v2.cpp:790:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:807:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:812:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:821:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:834:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:835:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:836:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:837:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:840:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:841:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:844:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:845:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:848:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:849:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:863:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:864:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:877:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:884:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:889:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:894:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:899:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:901:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:913:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:918:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:923:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:928:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'std::vector<std::vector<double> > Random::MatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Random_v2.cpp:948:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:950:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:966:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:968:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:973:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:976:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:978:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:994:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1007:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1008:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1009:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1010:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1012:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1013:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1016:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1017:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1020:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1021:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1035:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1036:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1048:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1050:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1057:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1062:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1067:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1070:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1072:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1074:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1086:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1088:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1093:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1096:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1098:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1133:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1135:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1143:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1144:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'double Random::PotentialHyperInverseWishart(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<std::vector<std::vector<double> > >&)':
Random_v2.cpp:1183:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1188:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1196:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1197:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1199:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1200:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'double Random::PotentialGaussianGraphicalModel(const std::vector<double>&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<double>&)':
Random_v2.cpp:1225:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1232:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1236:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1240:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1241:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1244:59: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1251:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1258:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1265:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1267:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1271:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'double Random::PotentialMatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&)':
Random_v2.cpp:1297:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1299:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1310:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'double Random::PotentialMatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<std::vector<double> >&)':
Random_v2.cpp:1335:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1336:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1343:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1345:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1350:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1351:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1355:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1356:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1357:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1360:61: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1361:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1380:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1385:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1391:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1393:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1396:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1398:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'std::vector<int> Random::Permutation(int)':
Random_v2.cpp:1822:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'double Random::lnGamma(double)':
Random_v2.cpp:1847:10: warning: unused variable 'x' [-Wunused-variable]
g++ -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c Rinterface_v2.cpp -o Rinterface_v2.o
In file included from Update_v2.h:8:0,
from Rinterface_v2.cpp:2:
Random.h:19:0: warning: "PI" redefined [enabled by default]
E:/biocbld/BBS-2˜1.12-/R/include/R_ext/Constants.h:32:0: note: this is the location of the previous definition
g++ -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c Structure.cpp -o Structure.o
In file included from Structure.cpp:29:0:
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(const string&, const std::vector<Potential*>&)':
ReportPotential.h:32:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(double*, const std::vector<Potential*>&)':
ReportPotential.h:48:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportPotential.h: In member function 'virtual void ReportPotential::report(const Structure*)':
ReportPotential.h:69:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportPotential.h:78:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from Structure.cpp:30:0:
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(const string&, const std::vector<Update*>&)':
ReportAcceptance.h:32:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(double*, const std::vector<Update*>&)':
ReportAcceptance.h:48:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportAcceptance.h: In member function 'virtual void ReportAcceptance::report(const Structure*)':
ReportAcceptance.h:67:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportAcceptance.h:76:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from ReportProbDelta.h:9:0,
from Structure.cpp:31:
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*>&)':
PotentialSum.h:30:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialSum.h: In destructor 'virtual PotentialSum::˜PotentialSum()':
PotentialSum.h:41:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from Structure.cpp:31:0:
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(const string&, Structure*, int)':
ReportProbDelta.h:53:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(double*, Structure*, int)':
ReportProbDelta.h:85:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportProbDelta.h: In destructor 'virtual ReportProbDelta::˜ReportProbDelta()':
ReportProbDelta.h:96:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Structure.cpp: In member function 'void Structure::setParameterValues(std::string&)':
Structure.cpp:528:8: warning: unused variable 'c' [-Wunused-variable]
Structure.cpp: In member function 'void Structure::setNumberOfUpdates(std::string&, std::vector<int>&, std::vector<Update*>&) const':
Structure.cpp:1642:8: warning: unused variable 'nRead' [-Wunused-variable]
Structure.cpp:1668:12: warning: unused variable 'nRead' [-Wunused-variable]
Structure.cpp:1579:12: warning: unused variable 'c' [-Wunused-variable]
Structure.cpp: In member function 'ReportDiffexpressed* Structure::setReports(std::string&, int&, std::vector<Potential*>&, std::vector<Update*>&, std::vector<Report*>&, int)':
Structure.cpp:1728:12: warning: unused variable 'c' [-Wunused-variable]
g++ -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c Update_v2.cpp -o Update_v2.o
Update_v2.cpp: In function 'void updateOmega_HyperInverseWishart(unsigned int*, int*, std::vector<std::vector<std::vector<double> > >&, int, int, const double*, const double*, const double*, const double*, const double*, double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Update_v2.cpp:3919:10: warning: unused variable 'pot' [-Wunused-variable]
Update_v2.cpp: In function 'void updateDDeltaStar_HyperInverseWishart(unsigned int*, int*, double*, int, int, const int*, const double*, const int*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Update_v2.cpp:3973:10: warning: unused variable 'pot' [-Wunused-variable]
g++ -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c Utility_v2.cpp -o Utility_v2.o
Utility_v2.cpp: In function 'double nuGibbs(double*, int, int, const int*, double, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const int*, const double*, Random&, int)':
Utility_v2.cpp:221:12: warning: unused variable 'detPrior' [-Wunused-variable]
Utility_v2.cpp:228:12: warning: unused variable 'detPosterior' [-Wunused-variable]
Utility_v2.cpp: In function 'double DeltaGibbs(int, double*, int, int, const int*, double, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const int*, const double*, Random&, int)':
Utility_v2.cpp:303:9: warning: unused variable 's' [-Wunused-variable]
Utility_v2.cpp:328:12: warning: unused variable 'detPrior' [-Wunused-variable]
Utility_v2.cpp:334:12: warning: unused variable 'detPosterior' [-Wunused-variable]
Utility_v2.cpp: In function 'void updateMRF1perfect_onedelta(int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, double, Random&)':
Utility_v2.cpp:413:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:435:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:447:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp: In function 'double perfectMRF1_onedelta(int*, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, double, unsigned int*, int)':
Utility_v2.cpp:556:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:600:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp: In function 'void updateMRF2perfect_onedelta(int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, Random&)':
Utility_v2.cpp:635:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp: In function 'double perfectMRF2_onedelta(int*, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, unsigned int*, int)':
Utility_v2.cpp:723:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:760:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:764:6: warning: unused variable 'ngg' [-Wunused-variable]
Utility_v2.cpp: In function 'void updateMRF2perfect(int, int, int, int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, double, Random&)':
Utility_v2.cpp:793:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp: In function 'double perfectMRF2(int*, int, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, double, unsigned int*, int)':
Utility_v2.cpp:904:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:949:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:954:8: warning: unused variable 'ngg' [-Wunused-variable]
Utility_v2.cpp: In function 'double OmegaGibbs(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, int, int, const double*, const double*, const double*, const double*, const double*, std::vector<std::vector<std::vector<double> > >&, Random&, int)':
Utility_v2.cpp:1027:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1028:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1036:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1041:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1047:56: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1059:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1060:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp: In function 'double DeltaStarGibbs(const std::vector<int>&, const std::vector<std::vector<int> >&, int, int, const int*, double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const double*, const std::vector<std::vector<std::vector<double> > >&, Random&, int)':
Utility_v2.cpp:1096:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1101:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1104:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1107:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1115:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1129:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1133:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1135:59: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1238:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1240:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1242:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1258:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1260:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1262:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1409:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1458:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1460:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1463:33: warning: variable 'itextra' set but not used [-Wunused-but-set-variable]
Utility_v2.cpp:1501:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1563:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1565:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1600:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1602:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1653:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1693:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1713:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1779:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp: In function 'void inverseTransformOmega(const std::vector<std::vector<std::vector<double> > >&, double*)':
Utility_v2.cpp:1875:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1877:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c diffExpressed_main.cpp -o diffExpressed_main.o
In file included from diffExpressed_main.cpp:16:0:
Random.h:19:0: warning: "PI" redefined [enabled by default]
E:/biocbld/BBS-2˜1.12-/R/include/R_ext/Constants.h:32:0: note: this is the location of the previous definition
In file included from diffExpressed_main.cpp:22:0:
PotentialX.h: In destructor 'virtual PotentialX::˜PotentialX()':
PotentialX.h:44:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialX.h: In member function 'virtual double PotentialX::potential(Random&) const':
PotentialX.h:64:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:31:0:
PotentialSigma2.h: In destructor 'virtual PotentialSigma2::˜PotentialSigma2()':
PotentialSigma2.h:44:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialSigma2.h: In member function 'virtual double PotentialSigma2::potential(Random&) const':
PotentialSigma2.h:64:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:32:0:
PotentialPhi.h: In destructor 'virtual PotentialPhi::˜PotentialPhi()':
PotentialPhi.h:44:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialPhi.h: In member function 'virtual double PotentialPhi::potential(Random&) const':
PotentialPhi.h:64:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:33:0:
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*>&)':
PotentialSum.h:30:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialSum.h: In destructor 'virtual PotentialSum::˜PotentialSum()':
PotentialSum.h:41:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:41:0:
UpdateDeltaMH.h: In constructor 'UpdateDeltaMH::UpdateDeltaMH(Structure*, int)':
UpdateDeltaMH.h:47:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateDeltaMH.h: In destructor 'virtual UpdateDeltaMH::˜UpdateDeltaMH()':
UpdateDeltaMH.h:59:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from UpdateSigma2MH.h:4:0,
from diffExpressed_main.cpp:43:
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:50:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h:53:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:76:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*>&, const std::vector<double*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:124:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h:127:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h:130:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:159:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h:162:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h: In member function 'virtual int UpdateMultiplicativePositive::update(Random&)':
UpdateMultiplicativePositive.h:213:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:43:0:
UpdateSigma2MH.h: In constructor 'UpdateSigma2MH::UpdateSigma2MH(Structure*, double)':
UpdateSigma2MH.h:49:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateSigma2MH.h: In destructor 'virtual UpdateSigma2MH::˜UpdateSigma2MH()':
UpdateSigma2MH.h:61:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateSigma2MH.h: In member function 'virtual void UpdateSigma2MH::setEpsilon(double)':
UpdateSigma2MH.h:71:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateSigma2MH.h: In member function 'virtual int UpdateSigma2MH::update(Random&)':
UpdateSigma2MH.h:96:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:44:0:
UpdateTMH.h: In constructor 'UpdateTMH::UpdateTMH(Structure*, const Potential*, double)':
UpdateTMH.h:48:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateTMH.h: In destructor 'virtual UpdateTMH::˜UpdateTMH()':
UpdateTMH.h:60:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateTMH.h: In member function 'virtual int UpdateTMH::update(Random&)':
UpdateTMH.h:84:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:45:0:
UpdateLMH.h: In constructor 'UpdateLMH::UpdateLMH(Structure*, const Potential*, double)':
UpdateLMH.h:49:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateLMH.h: In destructor 'virtual UpdateLMH::˜UpdateLMH()':
UpdateLMH.h:61:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateLMH.h: In member function 'virtual void UpdateLMH::setEpsilon(double)':
UpdateLMH.h:73:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateLMH.h: In member function 'virtual int UpdateLMH::update(Random&)':
UpdateLMH.h:99:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:46:0:
UpdatePhiMH.h: In constructor 'UpdatePhiMH::UpdatePhiMH(Structure*, double)':
UpdatePhiMH.h:45:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdatePhiMH.h: In destructor 'virtual UpdatePhiMH::˜UpdatePhiMH()':
UpdatePhiMH.h:57:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdatePhiMH.h: In member function 'virtual void UpdatePhiMH::setEpsilon(double)':
UpdatePhiMH.h:69:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdatePhiMH.h: In member function 'virtual int UpdatePhiMH::update(Random&)':
UpdatePhiMH.h:96:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:47:0:
UpdateThetaMH.h: In constructor 'UpdateThetaMH::UpdateThetaMH(Structure*, const Potential*, double)':
UpdateThetaMH.h:49:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateThetaMH.h: In destructor 'virtual UpdateThetaMH::˜UpdateThetaMH()':
UpdateThetaMH.h:61:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateThetaMH.h: In member function 'virtual int UpdateThetaMH::update(Random&)':
UpdateThetaMH.h:85:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:48:0:
UpdateLambdaMH.h: In constructor 'UpdateLambdaMH::UpdateLambdaMH(Structure*, const Potential*, double)':
UpdateLambdaMH.h:47:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateLambdaMH.h: In destructor 'virtual UpdateLambdaMH::˜UpdateLambdaMH()':
UpdateLambdaMH.h:59:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateLambdaMH.h: In member function 'virtual int UpdateLambdaMH::update(Random&)':
UpdateLambdaMH.h:83:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:143:0:
PotentialFunction.h: In function 'void xdeLIN_main(int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, int*, char**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*)':
PotentialFunction.h:55:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
diffExpressed_main.cpp:202:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
diffExpressed_main.cpp:217:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
diffExpressed_main.cpp:224:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
diffExpressed_main.cpp:227:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m32 -shared -s -static-libgcc -o XDE.dll tmp.def Cholesky.o Matrix_v2.o Potential_v2.o Random_v2.o Rinterface_v2.o Structure.o Update_v2.o Utility_v2.o diffExpressed_main.o -lm -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/XDE.buildbin-libdir/XDE/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'pairs' from package 'graphics' in package 'XDE'
Creating a generic function for 'plot' from package 'graphics' in package 'XDE'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'XDE' ...
** libs
g++ -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c Cholesky.cpp -o Cholesky.o
g++ -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c Matrix_v2.cpp -o Matrix_v2.o
Matrix_v2.cpp: In function 'void matrixMult(const std::vector<std::vector<double> >&, const std::vector<double>&, std::vector<double>&)':
Matrix_v2.cpp:244:7: warning: unused variable 'k' [-Wunused-variable]
Matrix_v2.cpp:246:9: warning: unused variable 'j' [-Wunused-variable]
g++ -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c Potential_v2.cpp -o Potential_v2.o
Potential_v2.cpp: In function 'double potentialDDeltaStar_HyperInverseWishart(int, const double*, const double*, const double*, const double*, const double*, int, int, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Potential_v2.cpp:308:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:310:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:316:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:321:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:322:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:328:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:329:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:330:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:335:61: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:336:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:345:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:347:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:356:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:364:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:366:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:369:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:371:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Potential_v2.cpp:374:38: warning: statement has no effect [-Wunused-value]
Potential_v2.cpp: In function 'double potentialOmega0(double, double, double)':
Potential_v2.cpp:876:19: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
g++ -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c Random_v2.cpp -o Random_v2.o
Random_v2.cpp: In member function 'int Random::Discrete(const std::vector<double>&)':
Random_v2.cpp:159:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'std::vector<std::vector<double> > Random::CorrelationStandardInverseWishartAlternativeParam(int, double)':
Random_v2.cpp:512:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:515:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'std::vector<std::vector<std::vector<double> > > Random::HyperInverseWishart(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Random_v2.cpp:548:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:551:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:557:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:558:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:571:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:585:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:586:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:587:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:588:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:590:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:591:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:594:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:595:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:598:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:599:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:608:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:610:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:625:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:627:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:675:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:677:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:693:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:695:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:705:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:706:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:726:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:728:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:740:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:741:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:746:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:747:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:749:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:750:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:752:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:753:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:760:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:761:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'std::vector<double> Random::GaussianGraphicalModel(const std::vector<double>&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Random_v2.cpp:790:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:807:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:812:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:821:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:834:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:835:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:836:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:837:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:840:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:841:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:844:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:845:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:848:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:849:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:863:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:864:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:877:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:884:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:889:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:894:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:899:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:901:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:913:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:918:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:923:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:928:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'std::vector<std::vector<double> > Random::MatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Random_v2.cpp:948:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:950:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:966:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:968:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:973:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:976:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:978:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:994:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1007:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1008:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1009:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1010:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1012:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1013:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1016:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1017:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1020:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1021:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1035:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1036:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1048:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1050:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1057:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1062:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1067:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1070:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1072:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1074:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1086:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1088:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1093:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1096:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1098:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1133:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1135:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1143:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1144:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'double Random::PotentialHyperInverseWishart(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<std::vector<std::vector<double> > >&)':
Random_v2.cpp:1183:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1188:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1196:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1197:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1199:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1200:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'double Random::PotentialGaussianGraphicalModel(const std::vector<double>&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<double>&)':
Random_v2.cpp:1225:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1232:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1236:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1240:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1241:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1244:59: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1251:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1258:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1265:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1267:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1271:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'double Random::PotentialMatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&)':
Random_v2.cpp:1297:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1299:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1310:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'double Random::PotentialMatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<std::vector<double> >&)':
Random_v2.cpp:1335:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1336:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1343:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1345:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1350:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1351:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1355:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1356:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1357:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1360:61: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1361:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1380:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1385:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1391:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1393:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1396:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp:1398:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'std::vector<int> Random::Permutation(int)':
Random_v2.cpp:1822:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Random_v2.cpp: In member function 'double Random::lnGamma(double)':
Random_v2.cpp:1847:10: warning: unused variable 'x' [-Wunused-variable]
g++ -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c Rinterface_v2.cpp -o Rinterface_v2.o
In file included from Update_v2.h:8:0,
from Rinterface_v2.cpp:2:
Random.h:19:0: warning: "PI" redefined [enabled by default]
E:/biocbld/BBS-2˜1.12-/R/include/R_ext/Constants.h:32:0: note: this is the location of the previous definition
g++ -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c Structure.cpp -o Structure.o
In file included from Structure.cpp:29:0:
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(const string&, const std::vector<Potential*>&)':
ReportPotential.h:32:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(double*, const std::vector<Potential*>&)':
ReportPotential.h:48:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportPotential.h: In member function 'virtual void ReportPotential::report(const Structure*)':
ReportPotential.h:69:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportPotential.h:78:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from Structure.cpp:30:0:
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(const string&, const std::vector<Update*>&)':
ReportAcceptance.h:32:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(double*, const std::vector<Update*>&)':
ReportAcceptance.h:48:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportAcceptance.h: In member function 'virtual void ReportAcceptance::report(const Structure*)':
ReportAcceptance.h:67:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportAcceptance.h:76:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from ReportProbDelta.h:9:0,
from Structure.cpp:31:
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*>&)':
PotentialSum.h:30:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialSum.h: In destructor 'virtual PotentialSum::˜PotentialSum()':
PotentialSum.h:41:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from Structure.cpp:31:0:
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(const string&, Structure*, int)':
ReportProbDelta.h:53:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(double*, Structure*, int)':
ReportProbDelta.h:85:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ReportProbDelta.h: In destructor 'virtual ReportProbDelta::˜ReportProbDelta()':
ReportProbDelta.h:96:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Structure.cpp: In member function 'void Structure::setParameterValues(std::string&)':
Structure.cpp:528:8: warning: unused variable 'c' [-Wunused-variable]
Structure.cpp: In member function 'void Structure::setNumberOfUpdates(std::string&, std::vector<int>&, std::vector<Update*>&) const':
Structure.cpp:1642:8: warning: unused variable 'nRead' [-Wunused-variable]
Structure.cpp:1668:12: warning: unused variable 'nRead' [-Wunused-variable]
Structure.cpp:1579:12: warning: unused variable 'c' [-Wunused-variable]
Structure.cpp: In member function 'ReportDiffexpressed* Structure::setReports(std::string&, int&, std::vector<Potential*>&, std::vector<Update*>&, std::vector<Report*>&, int)':
Structure.cpp:1728:12: warning: unused variable 'c' [-Wunused-variable]
g++ -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c Update_v2.cpp -o Update_v2.o
Update_v2.cpp: In function 'void updateOmega_HyperInverseWishart(unsigned int*, int*, std::vector<std::vector<std::vector<double> > >&, int, int, const double*, const double*, const double*, const double*, const double*, double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Update_v2.cpp:3919:10: warning: unused variable 'pot' [-Wunused-variable]
Update_v2.cpp: In function 'void updateDDeltaStar_HyperInverseWishart(unsigned int*, int*, double*, int, int, const int*, const double*, const int*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Update_v2.cpp:3973:10: warning: unused variable 'pot' [-Wunused-variable]
g++ -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c Utility_v2.cpp -o Utility_v2.o
Utility_v2.cpp: In function 'double nuGibbs(double*, int, int, const int*, double, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const int*, const double*, Random&, int)':
Utility_v2.cpp:221:12: warning: unused variable 'detPrior' [-Wunused-variable]
Utility_v2.cpp:228:12: warning: unused variable 'detPosterior' [-Wunused-variable]
Utility_v2.cpp: In function 'double DeltaGibbs(int, double*, int, int, const int*, double, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const int*, const double*, Random&, int)':
Utility_v2.cpp:303:9: warning: unused variable 's' [-Wunused-variable]
Utility_v2.cpp:328:12: warning: unused variable 'detPrior' [-Wunused-variable]
Utility_v2.cpp:334:12: warning: unused variable 'detPosterior' [-Wunused-variable]
Utility_v2.cpp: In function 'void updateMRF1perfect_onedelta(int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, double, Random&)':
Utility_v2.cpp:413:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:435:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:447:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp: In function 'double perfectMRF1_onedelta(int*, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, double, unsigned int*, int)':
Utility_v2.cpp:556:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:600:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp: In function 'void updateMRF2perfect_onedelta(int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, Random&)':
Utility_v2.cpp:635:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp: In function 'double perfectMRF2_onedelta(int*, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, unsigned int*, int)':
Utility_v2.cpp:723:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:760:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:764:6: warning: unused variable 'ngg' [-Wunused-variable]
Utility_v2.cpp: In function 'void updateMRF2perfect(int, int, int, int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, double, Random&)':
Utility_v2.cpp:793:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp: In function 'double perfectMRF2(int*, int, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, double, unsigned int*, int)':
Utility_v2.cpp:904:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:949:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:954:8: warning: unused variable 'ngg' [-Wunused-variable]
Utility_v2.cpp: In function 'double OmegaGibbs(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, int, int, const double*, const double*, const double*, const double*, const double*, std::vector<std::vector<std::vector<double> > >&, Random&, int)':
Utility_v2.cpp:1027:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1028:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1036:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1041:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1047:56: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1059:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1060:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp: In function 'double DeltaStarGibbs(const std::vector<int>&, const std::vector<std::vector<int> >&, int, int, const int*, double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const double*, const std::vector<std::vector<std::vector<double> > >&, Random&, int)':
Utility_v2.cpp:1096:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1101:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1104:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1107:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1115:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1129:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1133:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1135:59: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1238:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1240:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1242:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1258:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1260:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1262:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1409:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1458:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1460:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1463:33: warning: variable 'itextra' set but not used [-Wunused-but-set-variable]
Utility_v2.cpp:1501:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1563:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1565:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1600:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1602:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1653:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1693:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1713:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1779:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp: In function 'void inverseTransformOmega(const std::vector<std::vector<std::vector<double> > >&, double*)':
Utility_v2.cpp:1875:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Utility_v2.cpp:1877:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c diffExpressed_main.cpp -o diffExpressed_main.o
In file included from diffExpressed_main.cpp:16:0:
Random.h:19:0: warning: "PI" redefined [enabled by default]
E:/biocbld/BBS-2˜1.12-/R/include/R_ext/Constants.h:32:0: note: this is the location of the previous definition
In file included from diffExpressed_main.cpp:22:0:
PotentialX.h: In destructor 'virtual PotentialX::˜PotentialX()':
PotentialX.h:44:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialX.h: In member function 'virtual double PotentialX::potential(Random&) const':
PotentialX.h:64:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:31:0:
PotentialSigma2.h: In destructor 'virtual PotentialSigma2::˜PotentialSigma2()':
PotentialSigma2.h:44:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialSigma2.h: In member function 'virtual double PotentialSigma2::potential(Random&) const':
PotentialSigma2.h:64:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:32:0:
PotentialPhi.h: In destructor 'virtual PotentialPhi::˜PotentialPhi()':
PotentialPhi.h:44:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialPhi.h: In member function 'virtual double PotentialPhi::potential(Random&) const':
PotentialPhi.h:64:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:33:0:
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*>&)':
PotentialSum.h:30:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialSum.h: In destructor 'virtual PotentialSum::˜PotentialSum()':
PotentialSum.h:41:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:41:0:
UpdateDeltaMH.h: In constructor 'UpdateDeltaMH::UpdateDeltaMH(Structure*, int)':
UpdateDeltaMH.h:47:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateDeltaMH.h: In destructor 'virtual UpdateDeltaMH::˜UpdateDeltaMH()':
UpdateDeltaMH.h:59:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from UpdateSigma2MH.h:4:0,
from diffExpressed_main.cpp:43:
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:50:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h:53:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:76:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*>&, const std::vector<double*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:124:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h:127:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h:130:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:159:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h:162:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateMultiplicativePositive.h: In member function 'virtual int UpdateMultiplicativePositive::update(Random&)':
UpdateMultiplicativePositive.h:213:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:43:0:
UpdateSigma2MH.h: In constructor 'UpdateSigma2MH::UpdateSigma2MH(Structure*, double)':
UpdateSigma2MH.h:49:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateSigma2MH.h: In destructor 'virtual UpdateSigma2MH::˜UpdateSigma2MH()':
UpdateSigma2MH.h:61:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateSigma2MH.h: In member function 'virtual void UpdateSigma2MH::setEpsilon(double)':
UpdateSigma2MH.h:71:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateSigma2MH.h: In member function 'virtual int UpdateSigma2MH::update(Random&)':
UpdateSigma2MH.h:96:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:44:0:
UpdateTMH.h: In constructor 'UpdateTMH::UpdateTMH(Structure*, const Potential*, double)':
UpdateTMH.h:48:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateTMH.h: In destructor 'virtual UpdateTMH::˜UpdateTMH()':
UpdateTMH.h:60:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateTMH.h: In member function 'virtual int UpdateTMH::update(Random&)':
UpdateTMH.h:84:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:45:0:
UpdateLMH.h: In constructor 'UpdateLMH::UpdateLMH(Structure*, const Potential*, double)':
UpdateLMH.h:49:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateLMH.h: In destructor 'virtual UpdateLMH::˜UpdateLMH()':
UpdateLMH.h:61:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateLMH.h: In member function 'virtual void UpdateLMH::setEpsilon(double)':
UpdateLMH.h:73:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateLMH.h: In member function 'virtual int UpdateLMH::update(Random&)':
UpdateLMH.h:99:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:46:0:
UpdatePhiMH.h: In constructor 'UpdatePhiMH::UpdatePhiMH(Structure*, double)':
UpdatePhiMH.h:45:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdatePhiMH.h: In destructor 'virtual UpdatePhiMH::˜UpdatePhiMH()':
UpdatePhiMH.h:57:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdatePhiMH.h: In member function 'virtual void UpdatePhiMH::setEpsilon(double)':
UpdatePhiMH.h:69:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdatePhiMH.h: In member function 'virtual int UpdatePhiMH::update(Random&)':
UpdatePhiMH.h:96:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:47:0:
UpdateThetaMH.h: In constructor 'UpdateThetaMH::UpdateThetaMH(Structure*, const Potential*, double)':
UpdateThetaMH.h:49:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateThetaMH.h: In destructor 'virtual UpdateThetaMH::˜UpdateThetaMH()':
UpdateThetaMH.h:61:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateThetaMH.h: In member function 'virtual int UpdateThetaMH::update(Random&)':
UpdateThetaMH.h:85:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:48:0:
UpdateLambdaMH.h: In constructor 'UpdateLambdaMH::UpdateLambdaMH(Structure*, const Potential*, double)':
UpdateLambdaMH.h:47:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateLambdaMH.h: In destructor 'virtual UpdateLambdaMH::˜UpdateLambdaMH()':
UpdateLambdaMH.h:59:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
UpdateLambdaMH.h: In member function 'virtual int UpdateLambdaMH::update(Random&)':
UpdateLambdaMH.h:83:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from diffExpressed_main.cpp:143:0:
PotentialFunction.h: In function 'void xdeLIN_main(int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, int*, char**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*)':
PotentialFunction.h:55:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
diffExpressed_main.cpp:202:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
diffExpressed_main.cpp:217:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
diffExpressed_main.cpp:224:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
diffExpressed_main.cpp:227:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m64 -shared -s -static-libgcc -o XDE.dll tmp.def Cholesky.o Matrix_v2.o Potential_v2.o Random_v2.o Rinterface_v2.o Structure.o Update_v2.o Utility_v2.o diffExpressed_main.o -lm -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/XDE.buildbin-libdir/XDE/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'XDE' as XDE_2.6.0.zip
* DONE (XDE)