Package: SSPA

Version: 1.14.2

Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch SSPA_1.14.2.tar.gz

StartedAt: 2013-03-25 01:26:00 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 01:27:11 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 70.9 seconds

RetCode: 0

Status:  OK

CheckDir: SSPA.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/SSPA.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'SSPA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SSPA' version '1.14.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'SSPA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... NOTE
The following files should probably not be installed:
  'figChunk17.pdf'

Consider the use of a .Rinstignore file: see 'Writing R Extensions',
or move the vignette sources from 'inst/doc' to 'vignettes'.
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
Power          9.164  5.003  15.519
sampleSize     2.408  3.629   6.423
plotEffectSize 2.408  3.592   6.418
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' calls not declared from:
  'convert' 'marray'
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  '/Users/biocbuild/bbs-2.11-bioc/meat/SSPA.Rcheck/00check.log'
for details.

* installing *source* package 'SSPA' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c massdist.c -o massdist.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o SSPA.so massdist.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/SSPA.Rcheck/SSPA/libs/i386
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'hist' from package 'graphics' in package 'SSPA'
Creating a generic function for 'plot' from package 'graphics' in package 'SSPA'
** help
*** installing help indices
** building package indices
** installing vignettes
   'SSPA.Rnw' using 'latin-9' 
** testing if installed package can be loaded

* DONE (SSPA)

name	user	system	elapsed
Power	9.164	5.003	15.519
hist	0.137	0.032	0.175
pilotData	0.216	0.044	0.270
plot	0.144	0.026	0.177
plotEffectSize	2.408	3.592	6.418
sampleSize	2.408	3.629	6.423