Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R [S] T  U  V  W  X  Y  Z 

Package 564/609HostnameOS / ArchBUILDCHECKBUILD BIN
SSPA 1.14.2
Maarten van Iterson
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/SSPA
Last Changed Rev: 71324 / Revision: 74773
Last Changed Date: 2012-11-19 00:14:56 -0800 (Mon, 19 Nov 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: SSPA
Version: 1.14.2
Command: rm -rf SSPA.buildbin-libdir && mkdir SSPA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SSPA_1.14.2.tar.gz /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R SSPA.buildbin-libdir
StartedAt: 2013-03-25 02:09:14 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 02:09:28 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 14.0 seconds
RetCode: 0
Status:  OK 
PackageFile: SSPA_1.14.2.tgz
PackageFileSize: 581.8 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=SSPA.buildbin-libdir SSPA_1.14.2.tar.gz'
>>>>>>> 

* installing *source* package 'SSPA' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c massdist.c -o massdist.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o SSPA.so massdist.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/SSPA.buildbin-libdir/SSPA/libs/i386
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'hist' from package 'graphics' in package 'SSPA'
Creating a generic function for 'plot' from package 'graphics' in package 'SSPA'
** help
*** installing help indices
** building package indices
** installing vignettes
   'SSPA.Rnw' using 'latin-9' 
** testing if installed package can be loaded

* DONE (SSPA)


>>>>>>> 
>>>>>>> FIXING LINKS FOR SSPA.buildbin-libdir/SSPA/libs/i386/SSPA.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "SSPA.buildbin-libdir/SSPA/libs/i386/SSPA.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "SSPA.buildbin-libdir/SSPA/libs/i386/SSPA.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "SSPA.buildbin-libdir/SSPA/libs/i386/SSPA.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "SSPA.buildbin-libdir/SSPA/libs/i386/SSPA.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=SSPA.buildbin-libdir --libs-only SSPA_1.14.2.tar.gz'
>>>>>>> 

* installing *source* package 'SSPA' ...
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c massdist.c -o massdist.o
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o SSPA.so massdist.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/SSPA.buildbin-libdir/SSPA/libs/x86_64

* DONE (SSPA)


>>>>>>> 
>>>>>>> FIXING LINKS FOR SSPA.buildbin-libdir/SSPA/libs/x86_64/SSPA.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "SSPA.buildbin-libdir/SSPA/libs/x86_64/SSPA.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "SSPA.buildbin-libdir/SSPA/libs/x86_64/SSPA.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "SSPA.buildbin-libdir/SSPA/libs/x86_64/SSPA.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "SSPA.buildbin-libdir/SSPA/libs/x86_64/SSPA.so"