Package: MLInterfaces

Version: 1.38.1

Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch MLInterfaces_1.38.1.tar.gz

StartedAt: 2013-03-25 00:28:26 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 00:33:07 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 280.7 seconds

RetCode: 0

Status:  OK

CheckDir: MLInterfaces.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/MLInterfaces.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'MLInterfaces/DESCRIPTION' ... OK
* this is package 'MLInterfaces' version '1.38.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'MLInterfaces' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package(s) unavailable to check Rd xrefs: 'multicore'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
MLearn-new 23.115  3.384  27.487
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.11-bioc/meat/MLInterfaces.Rcheck/00check.log'
for details.

* installing *source* package 'MLInterfaces' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'MLInterfaces.Rnw' 
   'MLint_devel.Rnw' 
   'MLprac2_2.Rnw' 
   'xvalComputerClusters.Rnw' 
** testing if installed package can be loaded

* DONE (MLInterfaces)

name	user	system	elapsed
MLearn-new	23.115	3.384	27.487
RAB	0.167	0.006	0.237
balKfold.xvspec	0.013	0.004	0.040
classifierOutput-class	2.412	0.906	4.560
clusteringOutput-class	0.000	0.003	0.005
confuMat-methods	0.385	0.107	0.538
fs.absT	0.043	0.029	0.090
fsHistory	3.013	0.488	0.330
learnerSchema-class	0.001	0.000	0.001
planarPlot-methods	2.842	0.549	3.636
predict.classifierOutput	4.325	0.302	4.975
raboostCont-class	0.001	0.000	0.002
varImpStruct-class	1.071	0.125	1.242
xvalLoop	0.000	0.001	0.001
xvalSpec	0.230	0.270	0.767