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Package 386/609HostnameOS / ArchBUILDCHECKBUILD BIN
MLInterfaces 1.38.1
V. Carey
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/MLInterfaces
Last Changed Rev: 72689 / Revision: 74773
Last Changed Date: 2013-01-18 17:46:57 -0800 (Fri, 18 Jan 2013)
lamb1 Linux (openSUSE 12.1) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: MLInterfaces
Version: 1.38.1
Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings MLInterfaces_1.38.1.tar.gz
StartedAt: 2013-03-25 03:06:19 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 03:11:19 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 299.8 seconds
RetCode: 0
Status:  OK 
CheckDir: MLInterfaces.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/MLInterfaces.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MLInterfaces/DESCRIPTION’ ... OK
* this is package ‘MLInterfaces’ version ‘1.38.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘MLInterfaces’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package(s) unavailable to check Rd xrefs: ‘multicore’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
MLearn-new 25.114  1.664   27.71
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/MLInterfaces.Rcheck/00check.log’
for details.

MLInterfaces.Rcheck/00install.out:

* installing *source* package ‘MLInterfaces’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘MLInterfaces.Rnw’ 
   ‘MLint_devel.Rnw’ 
   ‘MLprac2_2.Rnw’ 
   ‘xvalComputerClusters.Rnw’ 
** testing if installed package can be loaded

* DONE (MLInterfaces)

MLInterfaces.Rcheck/MLInterfaces-Ex.timings:

nameusersystemelapsed
MLearn-new25.114 1.66427.710
RAB0.1360.0080.144
balKfold.xvspec0.0080.0000.010
classifierOutput-class3.2600.9642.968
clusteringOutput-class0.0000.0000.014
confuMat-methods0.3080.0240.452
fs.absT0.0240.0000.024
fsHistory2.2440.3080.197
learnerSchema-class0.0000.0000.001
planarPlot-methods2.7120.1402.874
predict.classifierOutput4.1280.0044.137
raboostCont-class0.0000.0000.002
varImpStruct-class0.9280.0360.968
xvalLoop000
xvalSpec0.2640.2040.396