install for i386
* installing *source* package 'RBGL' ...
found rbgl_trimmed_boost_1_49_0 header sources and tar archive;\n using what is there.
** libs
g++ -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c bbc.cpp -o bbc.o
g++ -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c cliques.cpp -o cliques.o
g++ -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c clusteringCoef.cpp -o clusteringCoef.o
clusteringCoef.cpp: In function 'SEXPREC* graphGenerator(SEXP, SEXP, SEXP)':
clusteringCoef.cpp:394:40: warning: 'u' may be used uninitialized in this function [-Wuninitialized]
g++ -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c dominatorTree.cpp -o dominatorTree.o
g++ -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o
g++ -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c hcs.cpp -o hcs.o
g++ -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c incrConnComp.cpp -o incrConnComp.o
incrConnComp.cpp: In function 'SEXPREC* BGL_incr_comp_internal(SEXP, SEXP, SEXP, E_IC_METHOD)':
incrConnComp.cpp:74:6: warning: unused variable 'child_index' [-Wunused-variable]
g++ -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c interfaces.cpp -o interfaces.o
g++ -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c minST.cpp -o minST.o
In file included from minST.cpp:2:0:
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'void boost::detail::kruskal_mst_impl(const Graph&, OutputIterator, Rank, Parent, Weight) [with Graph = R_adjacency_list, OutputIterator = std::back_insert_iterator > >, Rank = boost::iterator_property_map<__gnu_cxx::__normal_iterator >, boost::vec_adj_list_vertex_id_map, unsigned int>, unsigned int, unsigned int&>, Parent = boost::iterator_property_map<__gnu_cxx::__normal_iterator >, boost::vec_adj_list_vertex_id_map, unsigned int>, unsigned int, unsigned int&>, Weight = boost::adj_list_edge_property_map, boost::edge_weight_t>]':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)(& ei)+24).__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >::_M_current' may be used uninitialized in this function [-Wuninitialized]
rbgl_trimmed_boost_1_49_0/boost/graph/kruskal_min_spanning_tree.hpp:78:51: note: '*((void*)(& ei)+24).__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >::_M_current' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/edge.hpp:29:34: warning: '*((void*)(& ei)+16).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >, unsigned int, boost::detail::edge_desc_impl, int>::m_src' may be used uninitialized in this function [-Wuninitialized]
rbgl_trimmed_boost_1_49_0/boost/graph/kruskal_min_spanning_tree.hpp:78:51: note: '*((void*)(& ei)+16).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >, unsigned int, boost::detail::edge_desc_impl, int>::m_src' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/kruskal_min_spanning_tree.hpp:48:5: warning: '*((void*)(& ei)+16).__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >::_M_current' may be used uninitialized in this function [-Wuninitialized]
g++ -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c mincut.cpp -o mincut.o
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'SEXPREC* BGL_max_flow_internal(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, E_MF_METHOD)':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)(& ei)+24).__gnu_cxx::__normal_iterator > > > >*, std::vector > > > >, std::allocator > > > > > > >::_M_current' may be used uninitialized in this function [-Wuninitialized]
mincut.cpp:99:19: note: '*((void*)(& ei)+24).__gnu_cxx::__normal_iterator > > > >*, std::vector > > > >, std::allocator > > > > > > >::_M_current' was declared here
mincut.cpp:103:54: warning: '*((void*)(& ei)+16).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator > > > >*, std::vector > > > >, std::allocator > > > > > > >, unsigned int, boost::detail::edge_desc_impl, int>::m_src' may be used uninitialized in this function [-Wuninitialized]
g++ -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c ordering.cpp -o ordering.o
ordering.cpp: In function 'SEXPREC* BGL_king_ordering(SEXP, SEXP, SEXP, SEXP)':
ordering.cpp:180:48: warning: variable 'id' set but not used [-Wunused-but-set-variable]
g++ -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c planar.cpp -o planar.o
planar.cpp: In function 'SEXPREC* planarFaceTraversal(SEXP, SEXP, SEXP)':
planar.cpp:151:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp:153:53: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp:161:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp:165:58: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp: In function 'SEXPREC* planarCanonicalOrdering(SEXP, SEXP, SEXP)':
planar.cpp:256:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp: In function 'SEXPREC* isStraightLineDrawing(SEXP, SEXP, SEXP, SEXP)':
planar.cpp:369:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp: In function 'SEXPREC* isKuratowskiSubgraph(SEXP, SEXP, SEXP)':
planar.cpp:461:6: warning: unused variable 'i' [-Wunused-variable]
planar.cpp: In function 'SEXPREC* makeConnected(SEXP, SEXP, SEXP)':
planar.cpp:485:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp: In function 'SEXPREC* makeBiconnectedPlanar(SEXP, SEXP, SEXP)':
planar.cpp:539:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from planar.cpp:5:0:
rbgl_trimmed_boost_1_49_0/boost/graph/planar_canonical_ordering.hpp: In function 'void boost::planar_canonical_ordering(const Graph&, PlanarEmbedding, OutputIterator, VertexIndexMap) [with Graph = boost::adjacency_list, boost::property >, PlanarEmbedding = boost::iterator_property_map<__gnu_cxx::__normal_iterator >*, std::vector > > >, boost::vec_adj_list_vertex_id_map, unsigned int> >, OutputIterator = std::back_insert_iterator >, VertexIndexMap = boost::vec_adj_list_vertex_id_map, unsigned int>]':
rbgl_trimmed_boost_1_49_0/boost/graph/planar_canonical_ordering.hpp:149:17: warning: 'second_vertex' may be used uninitialized in this function [-Wuninitialized]
In file included from planar.cpp:11:0:
rbgl_trimmed_boost_1_49_0/boost/graph/max_cardinality_matching.hpp: In member function 'bool boost::edmonds_augmenting_path_finder::augment_matching() [with Graph = R_adjacency_list, MateMap = unsigned int*, VertexIndexMap = boost::vec_adj_list_vertex_id_map, unsigned int>]':
rbgl_trimmed_boost_1_49_0/boost/graph/max_cardinality_matching.hpp:334:7: warning: 'w' may be used uninitialized in this function [-Wuninitialized]
rbgl_trimmed_boost_1_49_0/boost/graph/max_cardinality_matching.hpp:333:7: warning: 'v' may be used uninitialized in this function [-Wuninitialized]
g++ -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c shortestPath.cpp -o shortestPath.o
In file included from shortestPath.cpp:4:0:
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list, DistanceMatrix = Basic2DMatrix, VertexID = boost::vec_adj_list_vertex_id_map, unsigned int>, Weight = boost::adj_list_edge_property_map, boost::edge_weight_t>, BinaryPredicate = std::less, BinaryFunction = boost::closed_plus, Infinity = double, DistanceZero = double]':
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:171:67: instantiated from 'bool boost::detail::johnson_dispatch(VertexAndEdgeListGraph&, DistanceMatrix&, const boost::bgl_named_params&, Weight, VertexID) [with VertexAndEdgeListGraph = R_adjacency_list, DistanceMatrix = Basic2DMatrix, P = int, T = int, R = boost::no_property, Weight = boost::adj_list_edge_property_map, boost::edge_weight_t>, VertexID = boost::vec_adj_list_vertex_id_map, unsigned int>]'
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:198:63: instantiated from 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&) [with VertexAndEdgeListGraph = R_adjacency_list, DistanceMatrix = Basic2DMatrix]'
shortestPath.cpp:56:46: instantiated from here
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:124:49: warning: variable 'u1' set but not used [-Wunused-but-set-variable]
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:124:53: warning: variable 'v1' set but not used [-Wunused-but-set-variable]
g++ -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c sna.cpp -o sna.o
sna.cpp: In function 'SEXPREC* lambdaSets(SEXP, SEXP, SEXP, SEXP)':
sna.cpp:161:9: warning: variable 'res_cap' set but not used [-Wunused-but-set-variable]
In file included from sna.cpp:3:0:
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list, DistanceMatrix = Basic2DMatrix, VertexID = boost::vec_adj_list_vertex_id_map, unsigned int>, Weight = boost::adj_list_edge_property_map, boost::edge_weight_t>, BinaryPredicate = std::less, BinaryFunction = boost::closed_plus, Infinity = double, DistanceZero = double]':
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:171:67: instantiated from 'bool boost::detail::johnson_dispatch(VertexAndEdgeListGraph&, DistanceMatrix&, const boost::bgl_named_params&, Weight, VertexID) [with VertexAndEdgeListGraph = R_adjacency_list, DistanceMatrix = Basic2DMatrix, P = int, T = int, R = boost::no_property, Weight = boost::adj_list_edge_property_map, boost::edge_weight_t>, VertexID = boost::vec_adj_list_vertex_id_map, unsigned int>]'
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:198:63: instantiated from 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&) [with VertexAndEdgeListGraph = R_adjacency_list, DistanceMatrix = Basic2DMatrix]'
sna.cpp:105:46: instantiated from here
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:124:49: warning: variable 'u1' set but not used [-Wunused-but-set-variable]
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:124:53: warning: variable 'v1' set but not used [-Wunused-but-set-variable]
g++ -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c transitive_closure.cpp -o transitive_closure.o
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'SEXPREC* BGL_transitive_closure_D(SEXP, SEXP, SEXP)':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)(& ei)+24).__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >::_M_current' may be used uninitialized in this function [-Wuninitialized]
transitive_closure.cpp:43:33: note: '*((void*)(& ei)+24).__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >::_M_current' was declared here
transitive_closure.cpp:46:50: warning: '*((void*)(& ei)+16).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >, unsigned int, boost::detail::edge_desc_impl, int>::m_src' may be used uninitialized in this function [-Wuninitialized]
g++ -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c wavefront.cpp -o wavefront.o
g++ -shared -s -static-libgcc -o RBGL.dll tmp.def bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o minST.o mincut.o ordering.o planar.o shortestPath.o sna.o transitive_closure.o wavefront.o -LE:/biocbld/BBS-2~1.10-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.10-bioc/meat/RBGL.buildbin-libdir/RBGL/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
'RBGL.Rnw'
** testing if installed package can be loaded
install for x64
* installing *source* package 'RBGL' ...
found rbgl_trimmed_boost_1_49_0 header sources and tar archive;\n using what is there.
** libs
g++ -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c bbc.cpp -o bbc.o
g++ -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c cliques.cpp -o cliques.o
g++ -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c clusteringCoef.cpp -o clusteringCoef.o
clusteringCoef.cpp: In function 'SEXPREC* graphGenerator(SEXP, SEXP, SEXP)':
clusteringCoef.cpp:394:40: warning: 'u' may be used uninitialized in this function [-Wuninitialized]
g++ -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c dominatorTree.cpp -o dominatorTree.o
g++ -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o
g++ -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c hcs.cpp -o hcs.o
g++ -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c incrConnComp.cpp -o incrConnComp.o
incrConnComp.cpp: In function 'SEXPREC* BGL_incr_comp_internal(SEXP, SEXP, SEXP, E_IC_METHOD)':
incrConnComp.cpp:74:6: warning: unused variable 'child_index' [-Wunused-variable]
g++ -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c interfaces.cpp -o interfaces.o
g++ -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c minST.cpp -o minST.o
In file included from minST.cpp:2:0:
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'void boost::detail::kruskal_mst_impl(const Graph&, OutputIterator, Rank, Parent, Weight) [with Graph = R_adjacency_list, OutputIterator = std::back_insert_iterator > >, Rank = boost::iterator_property_map<__gnu_cxx::__normal_iterator >, boost::vec_adj_list_vertex_id_map, long long unsigned int>, long long unsigned int, long long unsigned int&>, Parent = boost::iterator_property_map<__gnu_cxx::__normal_iterator >, boost::vec_adj_list_vertex_id_map, long long unsigned int>, long long unsigned int, long long unsigned int&>, Weight = boost::adj_list_edge_property_map, boost::edge_weight_t>]':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)(& ei)+48).__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >::_M_current' may be used uninitialized in this function [-Wuninitialized]
rbgl_trimmed_boost_1_49_0/boost/graph/kruskal_min_spanning_tree.hpp:78:51: note: '*((void*)(& ei)+48).__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >::_M_current' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/edge.hpp:29:34: warning: '*((void*)(& ei)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >, long long unsigned int, boost::detail::edge_desc_impl, long long int>::m_src' may be used uninitialized in this function [-Wuninitialized]
rbgl_trimmed_boost_1_49_0/boost/graph/kruskal_min_spanning_tree.hpp:78:51: note: '*((void*)(& ei)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >, long long unsigned int, boost::detail::edge_desc_impl, long long int>::m_src' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/kruskal_min_spanning_tree.hpp:48:5: warning: '*((void*)(& ei)+32).__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >::_M_current' may be used uninitialized in this function [-Wuninitialized]
g++ -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c mincut.cpp -o mincut.o
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'SEXPREC* BGL_max_flow_internal(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, E_MF_METHOD)':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)(& ei)+48).__gnu_cxx::__normal_iterator > > > >*, std::vector > > > >, std::allocator > > > > > > >::_M_current' may be used uninitialized in this function [-Wuninitialized]
mincut.cpp:99:19: note: '*((void*)(& ei)+48).__gnu_cxx::__normal_iterator > > > >*, std::vector > > > >, std::allocator > > > > > > >::_M_current' was declared here
mincut.cpp:103:54: warning: '*((void*)(& ei)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator > > > >*, std::vector > > > >, std::allocator > > > > > > >, long long unsigned int, boost::detail::edge_desc_impl, long long int>::m_src' may be used uninitialized in this function [-Wuninitialized]
g++ -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c ordering.cpp -o ordering.o
ordering.cpp: In function 'SEXPREC* BGL_king_ordering(SEXP, SEXP, SEXP, SEXP)':
ordering.cpp:180:48: warning: variable 'id' set but not used [-Wunused-but-set-variable]
g++ -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c planar.cpp -o planar.o
planar.cpp: In function 'SEXPREC* planarFaceTraversal(SEXP, SEXP, SEXP)':
planar.cpp:151:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp:153:53: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp:161:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp:165:58: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp: In function 'SEXPREC* planarCanonicalOrdering(SEXP, SEXP, SEXP)':
planar.cpp:256:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp: In function 'SEXPREC* isStraightLineDrawing(SEXP, SEXP, SEXP, SEXP)':
planar.cpp:369:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp: In function 'SEXPREC* isKuratowskiSubgraph(SEXP, SEXP, SEXP)':
planar.cpp:461:6: warning: unused variable 'i' [-Wunused-variable]
planar.cpp: In function 'SEXPREC* makeConnected(SEXP, SEXP, SEXP)':
planar.cpp:485:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp: In function 'SEXPREC* makeBiconnectedPlanar(SEXP, SEXP, SEXP)':
planar.cpp:539:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from planar.cpp:5:0:
rbgl_trimmed_boost_1_49_0/boost/graph/planar_canonical_ordering.hpp: In function 'void boost::planar_canonical_ordering(const Graph&, PlanarEmbedding, OutputIterator, VertexIndexMap) [with Graph = boost::adjacency_list, boost::property >, PlanarEmbedding = boost::iterator_property_map<__gnu_cxx::__normal_iterator >*, std::vector > > >, boost::vec_adj_list_vertex_id_map, long long unsigned int> >, OutputIterator = std::back_insert_iterator >, VertexIndexMap = boost::vec_adj_list_vertex_id_map, long long unsigned int>]':
rbgl_trimmed_boost_1_49_0/boost/graph/planar_canonical_ordering.hpp:149:17: warning: 'second_vertex' may be used uninitialized in this function [-Wuninitialized]
In file included from planar.cpp:11:0:
rbgl_trimmed_boost_1_49_0/boost/graph/max_cardinality_matching.hpp: In member function 'bool boost::edmonds_augmenting_path_finder::augment_matching() [with Graph = R_adjacency_list, MateMap = long long unsigned int*, VertexIndexMap = boost::vec_adj_list_vertex_id_map, long long unsigned int>]':
rbgl_trimmed_boost_1_49_0/boost/graph/max_cardinality_matching.hpp:334:7: warning: 'w' may be used uninitialized in this function [-Wuninitialized]
rbgl_trimmed_boost_1_49_0/boost/graph/max_cardinality_matching.hpp:333:7: warning: 'v' may be used uninitialized in this function [-Wuninitialized]
g++ -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c shortestPath.cpp -o shortestPath.o
In file included from shortestPath.cpp:4:0:
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list, DistanceMatrix = Basic2DMatrix, VertexID = boost::vec_adj_list_vertex_id_map, long long unsigned int>, Weight = boost::adj_list_edge_property_map, boost::edge_weight_t>, BinaryPredicate = std::less, BinaryFunction = boost::closed_plus, Infinity = double, DistanceZero = double]':
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:171:67: instantiated from 'bool boost::detail::johnson_dispatch(VertexAndEdgeListGraph&, DistanceMatrix&, const boost::bgl_named_params&, Weight, VertexID) [with VertexAndEdgeListGraph = R_adjacency_list, DistanceMatrix = Basic2DMatrix, P = int, T = int, R = boost::no_property, Weight = boost::adj_list_edge_property_map, boost::edge_weight_t>, VertexID = boost::vec_adj_list_vertex_id_map, long long unsigned int>]'
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:198:63: instantiated from 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&) [with VertexAndEdgeListGraph = R_adjacency_list, DistanceMatrix = Basic2DMatrix]'
shortestPath.cpp:56:46: instantiated from here
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:124:49: warning: variable 'u1' set but not used [-Wunused-but-set-variable]
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:124:53: warning: variable 'v1' set but not used [-Wunused-but-set-variable]
g++ -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c sna.cpp -o sna.o
sna.cpp: In function 'SEXPREC* lambdaSets(SEXP, SEXP, SEXP, SEXP)':
sna.cpp:161:9: warning: variable 'res_cap' set but not used [-Wunused-but-set-variable]
In file included from sna.cpp:3:0:
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list, DistanceMatrix = Basic2DMatrix, VertexID = boost::vec_adj_list_vertex_id_map, long long unsigned int>, Weight = boost::adj_list_edge_property_map, boost::edge_weight_t>, BinaryPredicate = std::less, BinaryFunction = boost::closed_plus, Infinity = double, DistanceZero = double]':
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:171:67: instantiated from 'bool boost::detail::johnson_dispatch(VertexAndEdgeListGraph&, DistanceMatrix&, const boost::bgl_named_params&, Weight, VertexID) [with VertexAndEdgeListGraph = R_adjacency_list, DistanceMatrix = Basic2DMatrix, P = int, T = int, R = boost::no_property, Weight = boost::adj_list_edge_property_map, boost::edge_weight_t>, VertexID = boost::vec_adj_list_vertex_id_map, long long unsigned int>]'
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:198:63: instantiated from 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&) [with VertexAndEdgeListGraph = R_adjacency_list, DistanceMatrix = Basic2DMatrix]'
sna.cpp:105:46: instantiated from here
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:124:49: warning: variable 'u1' set but not used [-Wunused-but-set-variable]
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:124:53: warning: variable 'v1' set but not used [-Wunused-but-set-variable]
g++ -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c transitive_closure.cpp -o transitive_closure.o
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adj_list_edge_iterator.hpp: In function 'SEXPREC* BGL_transitive_closure_D(SEXP, SEXP, SEXP)':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adj_list_edge_iterator.hpp:70:9: warning: '*((void*)(& ei)+48).__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >::_M_current' may be used uninitialized in this function [-Wuninitialized]
transitive_closure.cpp:43:33: note: '*((void*)(& ei)+48).__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >::_M_current' was declared here
transitive_closure.cpp:46:50: warning: '*((void*)(& ei)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >, long long unsigned int, boost::detail::edge_desc_impl, long long int>::m_src' may be used uninitialized in this function [-Wuninitialized]
g++ -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -Irbgl_trimmed_boost_1_49_0 -O2 -Wall -mtune=core2 -c wavefront.cpp -o wavefront.o
g++ -m64 -shared -s -static-libgcc -o RBGL.dll tmp.def bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o minST.o mincut.o ordering.o planar.o shortestPath.o sna.o transitive_closure.o wavefront.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2~1.10-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.10-bioc/meat/RBGL.buildbin-libdir/RBGL/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RBGL' as RBGL_1.32.1.zip
* DONE (RBGL)