anamiR

DOI: 10.18129/B9.bioc.anamiR    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see anamiR.

An integrated analysis package of miRNA and mRNA expression data

Bioconductor version: 3.8

This package is intended to identify potential interactions of miRNA-target gene interactions from miRNA and mRNA expression data. It contains functions for statistical test, databases of miRNA-target gene interaction and functional analysis.

Author: Ti-Tai Wang [aut, cre], Tzu-Pin Lu [aut], Chien-Yueh Lee[ctb,] Eric Y. Chuang [aut]

Maintainer: Ti-Tai Wang <r04945002 at ntu.edu.tw>

Citation (from within R, enter citation("anamiR")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("anamiR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("anamiR")

 

HTML R Script Introduction to anamiR
PDF   Reference Manual
Text   NEWS

Details

biocViews AssayDomain, BiologicalQuestion, DifferentialExpression, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneTarget, Genetics, Microarray, Normalization, Pathways, ResearchField, Sequencing, Software, Technology, WorkflowStep, miRNA
Version 1.10.0
In Bioconductor since BioC 3.4 (R-3.3) (2.5 years)
License GPL-2
Depends R (>= 3.5)
Imports stats, DBI, limma, lumi, agricolae, RMySQL, DESeq2, SummarizedExperiment, gplots, gage, S4Vectors
LinkingTo
Suggests knitr, rmarkdown, data.table
SystemRequirements
Enhances
URL https://github.com/AllenTiTaiWang/anamiR
BugReports https://github.com/AllenTiTaiWang/anamiR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package anamiR_1.10.0.tar.gz
Windows Binary anamiR_1.10.0.zip
Mac OS X 10.11 (El Capitan) anamiR_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/anamiR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/anamiR
Package Short Url http://bioconductor.org/packages/anamiR/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: