metaMS

DOI: 10.18129/B9.bioc.metaMS    

MS-based metabolomics annotation pipeline

Bioconductor version: Release (3.6)

MS-based metabolomics data processing and compound annotation pipeline.

Author: Ron Wehrens [aut, cre] (author of GC-MS part), Pietro Franceschi [aut] (author of LC-MS part), Nir Shahaf [ctb], Matthias Scholz [ctb], Georg Weingart [ctb] (development of GC-MS approach), Elisabete Carvalho [ctb] (testing and feedback of GC-MS pipeline)

Maintainer: Ron Wehrens <ron.wehrens at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("metaMS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("metaMS")

 

PDF	R Script	runGC
PDF	R Script	runLC
PDF		Reference Manual
Text		NEWS

Details

biocViews	MassSpectrometry, Metabolomics, Software
Version	1.14.0
In Bioconductor since	BioC 2.14 (R-3.1) (4 years)
License	GPL (>= 2)
Depends	R (>= 2.10), methods, CAMERA, xcms(>= 1.35)
Imports	Matrix, tools, robustbase, BiocGenerics
LinkingTo
Suggests	metaMSdata, RUnit
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	metaMS_1.14.0.tar.gz
Windows Binary	metaMS_1.14.0.zip
Mac OS X 10.11 (El Capitan)	metaMS_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/metaMS
Package Short Url	http://bioconductor.org/packages/metaMS/
Package Downloads Report	Download Stats