CAMERA

DOI: 10.18129/B9.bioc.CAMERA    

Collection of annotation related methods for mass spectrometry data

Bioconductor version: Release (3.6)

Annotation of peaklists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments

Author: Carsten Kuhl, Ralf Tautenhahn, Hendrik Treutler, Steffen Neumann {ckuhl|htreutle|sneumann}@ipb-halle.de, rtautenh@scripps.edu

Maintainer: Steffen Neumann <sneumann at ipb-halle.de>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CAMERA")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CAMERA")

 

PDF		Isotope pattern validation with CAMERA
PDF		Isotope pattern validation with CAMERA
PDF	R Script	Molecule Identification with CAMERA
PDF		Reference Manual
Text		NEWS

Details

biocViews	MassSpectrometry, Metabolomics, Software
Version	1.34.0
In Bioconductor since	BioC 2.4 (R-2.9) (9 years)
License	GPL (>= 2)
Depends	R (>= 2.1.0), methods, Biobase, xcms(>= 1.13.5)
Imports	methods, xcms, RBGL, graph, graphics, grDevices, stats, utils, Hmisc, igraph
LinkingTo
Suggests	faahKO, RUnit, BiocGenerics
SystemRequirements
Enhances	Rmpi, snow
URL	http://msbi.ipb-halle.de/msbi/CAMERA/
BugReports	https://github.com/sneumann/CAMERA/issues/new
Depends On Me	flagme, IPO, LOBSTAHS, MAIT, metaMS, PtH2O2lipids
Imports Me
Suggests Me	mtbls2, RMassBank, ropls
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CAMERA_1.34.0.tar.gz
Windows Binary	CAMERA_1.34.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	CAMERA_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CAMERA
Package Short Url	http://bioconductor.org/packages/CAMERA/
Package Downloads Report	Download Stats