Bioconductor version: Release (3.6)
The STRINGdb package provides a R interface to the STRING protein-protein interactions database (http://www.string-db.org).
Author: Andrea Franceschini <andrea.franceschini at isb-sib.ch>
Maintainer: Damian Szklarczyk <damian.szklarczyk at imls.uzh.ch>
Citation (from within R,
enter citation("STRINGdb")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("STRINGdb")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("STRINGdb")
R Script | STRINGdb Vignette | |
Reference Manual |
biocViews | Network, Software |
Version | 1.18.0 |
In Bioconductor since | BioC 2.13 (R-3.0) (4.5 years) |
License | GPL-2 |
Depends | R (>= 2.14.0) |
Imports | png, sqldf, plyr, igraph, RCurl, methods, RColorBrewer, gplots, hash, plotrix |
LinkingTo | |
Suggests | RUnit, BiocGenerics |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | PPInfer, scsR |
Imports Me | coexnet, pwOmics, RITAN |
Suggests Me | epiNEM, GeneNetworkBuilder, PCAN |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | STRINGdb_1.18.0.tar.gz |
Windows Binary | STRINGdb_1.18.0.zip |
Mac OS X 10.11 (El Capitan) | STRINGdb_1.18.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/STRINGdb |
Package Short Url | http://bioconductor.org/packages/STRINGdb/ |
Package Downloads Report | Download Stats |
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