Bioconductor version: Release (3.6)
Tools for comprehensive gene set enrichment and extraction of multi-resource high confidence subnetworks. RITAN facilitates bioinformatic tasks for enabling network biology research.
Author: Michael Zimmermann
Maintainer: Michael Zimmermann <zimmermann.michael at mayo.edu>
Citation (from within R,
enter citation("RITAN")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("RITAN")
HTML | R Script | Enrichment Vignette |
HTML | R Script | Enrichment Vignette |
HTML | R Script | Enrichment Vignette |
HTML | R Script | Enrichment Vignette |
HTML | R Script | Network Biology Vignette |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | FunctionalGenomics, GeneSetEnrichment, Network, NetworkEnrichment, NetworkInference, QualityControl, Software |
Version | 1.2.0 |
In Bioconductor since | BioC 3.5 (R-3.4) (1 year) |
License | file LICENSE |
Depends | R (>= 3.4), ProNet |
Imports | graphics, stats, utils, grid, gridExtra, reshape2, gplots, ggplot2, plotrix, RColorBrewer, STRINGdb, MCL, linkcomm, dynamicTreeCut, sqldf, gsubfn, hash, png, sqldf, igraph, BgeeDB, knitr, RITANdata |
LinkingTo | |
Suggests | rmarkdown |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | RITAN_1.2.0.tar.gz |
Windows Binary | RITAN_1.2.0.zip |
Mac OS X 10.11 (El Capitan) | RITAN_1.2.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/RITAN |
Package Short Url | http://bioconductor.org/packages/RITAN/ |
Package Downloads Report | Download Stats |
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