| Depends On Me |
AllelicImbalance, AneuFinder, AnnotationHubData, BPRMeth, BSgenome, BaalChIP, Basic4Cseq, BiSeq, BindingSiteFinder, BubbleTree, CAFE, CAGEfightR, CINdex, CNVPanelizer, CNVRanger, COCOA, CSAR, CSSQ, ChIPQC, ChIPpeakAnno, Cogito, DEScan2, DESeq2, DEXSeq, DMCFB, DMCHMM, DMRcaller, DNAshapeR, DiffBind, EnrichedHeatmap, ExCluster, FindIT2, GOTHiC, GUIDEseq, GeneBreak, GenomicAlignments, GenomicDistributions, GenomicFeatures, GenomicFiles, GenomicOZone, GenomicPlot, GenomicScores, GenomicTuples, GreyListChIP, Guitar, Gviz, HERON, HelloRanges, HiCDOC, HiTC, IWTomics, IdeoViz, InTAD, IntEREst, InteractionSet, MBASED, Melissa, MotifDb, MutationalPatterns, NADfinder, ORFik, QuasR, RJMCMCNucleosomes, RNAmodR, RSVSim, RaggedExperiment, RepViz, RnBeads, Rsamtools, SARC, SCOPE, SGSeq, SICtools, SMITE, SNPhood, Scale4C, SeqGate, SigFuge, SomaticSignatures, StructuralVariantAnnotation, SummarizedExperiment, TnT, TransView, VanillaICE, VarCon, VariantAnnotation, VariantTools, VplotR, YAPSA, alabaster.ranges, annmap, betaHMM, biomvRCNS, bnbc, breakpointR, bsseq, bumphunter, casper, chimeraviz, chipseq, chromPlot, chromstaR, cn.mops, cnvGSA, compEpiTools, consensusSeekeR, csaw, deepSNV, diffHic, easylift, ensemblVEP, ensembldb, epigenomix, esATAC, extraChIPs, fCCAC, fastseg, gmapR, gmoviz, groHMM, gtrellis, hiAnnotator, igvR, igvShiny, intansv, karyoploteR, m6Aboost, maser, metagene2, methimpute, methodical, methylKit, methylPipe, minfi, motifTestR, msgbsR, oncoscanR, periodicDNA, plyranges, podkat, r3Cseq, rGREAT, ramr, recoup, regioneR, riboSeqR, ribosomeProfilingQC, rtracklayer, segmentSeq, seqArchRplus, seqCAT, spiky, svaNUMT, svaRetro, tRNA, tRNAdbImport, tRNAscanImport, tadar, trackViewer, transmogR, traseR, txdbmaker, vtpnet, vulcan, wavClusteR, EuPathDB, excluderanges, ChAMPdata, EatonEtAlChIPseq, nullrangesData, RnBeads.hg19, RnBeads.hg38, RnBeads.mm10, RnBeads.mm9, RnBeads.rn5, WGSmapp, liftOver, sequencing, PlasmaMutationDetector, PlasmaMutationDetector2, rnaCrosslinkOO, RTIGER |
| Imports Me |
ACE, ALDEx2, APAlyzer, ASpli, ATACCoGAPS, ATACseqQC, ATACseqTFEA, AnnotationFilter, AssessORF, BBCAnalyzer, BEAT, BOBaFIT, BREW3R.r, BSgenomeForge, BUSpaRse, BadRegionFinder, BiFET, BiSeq, BiocOncoTK, CAGEr, CNEr, CNVMetrics, CNVfilteR, CNViz, CRISPRseek, CTexploreR, CexoR, ChIPexoQual, ChIPseeker, ChIPseqR, ChromHeatMap, ChromSCape, CopyNumberPlots, CoverageView, CrispRVariants, DAMEfinder, DEFormats, DEWSeq, DMRcate, DNAfusion, DRIMSeq, Damsel, DegCre, DegNorm, DominoEffect, DropletUtils, EDASeq, EDIRquery, ELMER, EpiMix, EpiTxDb, EventPointer, FLAMES, FRASER, FilterFFPE, GA4GHclient, GENESIS, GOfuncR, GRaNIE, GenVisR, GeneGeneInteR, GenomAutomorphism, GenomicAlignments, GenomicDataCommons, GenomicInteractionNodes, GenomicInteractions, GrafGen, HTSeqGenie, HiCBricks, HiCExperiment, HiCcompare, HiContacts, HiCool, HiLDA, HicAggR, HilbertCurve, IMAS, INSPEcT, IVAS, InterMineR, IsoformSwitchAnalyzeR, LOLA, LoomExperiment, MADSEQ, MDTS, MEAL, MEDIPS, MIRA, MMDiff2, MSA2dist, MethReg, MethylSeekR, MinimumDistance, Modstrings, Moonlight2R, Motif2Site, MouseFM, MultiAssayExperiment, MultiDataSet, MungeSumstats, NanoMethViz, OGRE, OUTRIDER, OmaDB, Organism.dplyr, OrganismDbi, OutSplice, PAST, PICS, PING, PIPETS, PhIPData, ProteoDisco, PureCN, Pviz, QDNAseq, Qtlizer, R3CPET, R453Plus1Toolbox, RAIDS, RCAS, REMP, RESOLVE, RGMQL, RNAmodR.AlkAnilineSeq, RNAmodR.ML, RNAmodR.RiboMethSeq, RTCGAToolbox, RareVariantVis, RcisTarget, Repitools, RgnTX, Rhisat2, RiboCrypt, RiboDiPA, RiboProfiling, Rmmquant, SOMNiBUS, SPLINTER, SeqArray, SeqSQC, SeqVarTools, ShortRead, SigsPack, SimFFPE, SingleCellExperiment, SingleMoleculeFootprinting, SparseSignatures, SpectralTAD, SpliceWiz, SplicingGraphs, TAPseq, TCGAbiolinks, TCGAutils, TCseq, TDbasedUFE, TDbasedUFEadv, TENxIO, TFARM, TFBSTools, TFEA.ChIP, TFHAZ, TRESS, TVTB, TitanCNA, UMI4Cats, UPDhmm, Ularcirc, Uniquorn, VCFArray, VaSP, VariantFiltering, XNAString, ZygosityPredictor, alabaster.se, amplican, annotatr, apeglm, appreci8R, atena, ballgown, bambu, bamsignals, baySeq, beadarray, biovizBase, biscuiteer, borealis, branchpointer, cBioPortalData, cageminer, cardelino, cfDNAPro, cfTools, cfdnakit, chipenrich, chipseq, chromDraw, chromVAR, cicero, circRNAprofiler, cleanUpdTSeq, cliProfiler, coMethDMR, comapr, conumee, crisprBase, crisprBowtie, crisprDesign, crisprViz, customProDB, debrowser, decompTumor2Sig, deconvR, deltaCaptureC, derfinderPlot, derfinder, diffUTR, dinoR, dmrseq, doubletrouble, easyRNASeq, eisaR, enhancerHomologSearch, epialleleR, epidecodeR, epigraHMM, epimutacions, epiregulon, epistack, epivizrData, epivizr, erma, factR, fcScan, fishpond, gDNAx, gINTomics, gcapc, geneAttribution, genomation, genomeIntervals, ggbio, gwascat, h5vc, heatmaps, hermes, hiReadsProcessor, hicVennDiagram, hummingbird, iNETgrate, icetea, ideal, idr2d, ipdDb, isomiRs, karyoploteR, katdetectr, knowYourCG, loci2path, lumi, mCSEA, magpie, mariner, megadepth, memes, metaseqR2, methInheritSim, methrix, methylCC, methylInheritance, methylSig, methylumi, missMethyl, mitoClone2, mobileRNA, monaLisa, mosaics, motifbreakR, motifmatchr, multiHiCcompare, multicrispr, musicatk, ncRNAtools, nearBynding, normr, nucleR, nullranges, oligoClasses, openPrimeR, packFinder, pageRank, panelcn.mops, partCNV, pcaExplorer, pepStat, pgxRpi, plotgardener, plyinteractions, pqsfinder, pram, prebs, preciseTAD, primirTSS, proActiv, proBAMr, profileplyr, pwOmics, qpgraph, qsea, rGADEM, raer, recount3, recount, regionReport, regionalpcs, regioneR, regutools, rfPred, rmspc, rnaEditr, roar, saseR, scDblFinder, scPipe, scRNAseqApp, scanMiRApp, scanMiR, scmeth, scoreInvHap, scruff, scuttle, segmenter, seq2pathway, seqPattern, seqsetvis, sesame, sevenC, shinyepico, signeR, sitadela, snapcount, soGGi, spatzie, srnadiff, strandCheckR, syntenet, systemPipeR, tLOH, target, terraTCGAdata, tidyCoverage, tidybulk, tracktables, transcriptR, transite, tricycle, triplex, txcutr, tximeta, uncoverappLib, wiggleplotr, xcore, BioMartGOGeneSets, fitCons.UCSC.hg19, MafDb.1Kgenomes.phase1.GRCh38, MafDb.1Kgenomes.phase1.hs37d5, MafDb.1Kgenomes.phase3.GRCh38, MafDb.1Kgenomes.phase3.hs37d5, MafDb.ExAC.r1.0.GRCh38, MafDb.ExAC.r1.0.hs37d5, MafDb.ExAC.r1.0.nonTCGA.GRCh38, MafDb.ExAC.r1.0.nonTCGA.hs37d5, MafDb.gnomAD.r2.1.GRCh38, MafDb.gnomAD.r2.1.hs37d5, MafDb.gnomADex.r2.1.GRCh38, MafDb.gnomADex.r2.1.hs37d5, MafDb.TOPMed.freeze5.hg19, MafDb.TOPMed.freeze5.hg38, MafH5.gnomAD.v3.1.2.GRCh38, MafH5.gnomAD.v4.0.GRCh38, phastCons100way.UCSC.hg19, phastCons100way.UCSC.hg38, phastCons7way.UCSC.hg38, SNPlocs.Hsapiens.dbSNP144.GRCh37, SNPlocs.Hsapiens.dbSNP144.GRCh38, SNPlocs.Hsapiens.dbSNP149.GRCh38, SNPlocs.Hsapiens.dbSNP150.GRCh38, SNPlocs.Hsapiens.dbSNP155.GRCh37, SNPlocs.Hsapiens.dbSNP155.GRCh38, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38, BioPlex, biscuiteerData, chipenrich.data, COSMIC.67, ELMER.data, fourDNData, GenomicDistributionsData, leeBamViews, mCSEAdata, MethylSeqData, pepDat, scMultiome, scRNAseq, sesameData, SomaticCancerAlterations, spatialLIBD, TumourMethData, VariantToolsData, ExpHunterSuite, recountWorkflow, seqpac, TCGAWorkflow, cinaR, crispRdesignR, driveR, geneHapR, geno2proteo, GenoPop, hahmmr, hoardeR, ICAMS, karyotapR, locuszoomr, lolliplot, LoopRig, MAAPER, MitoHEAR, MOCHA, noisyr, numbat, oncoPredict, PACVr, RapidoPGS, revert, scPloidy, Signac, simMP, VALERIE |
