AlphaMissenseR
Accessing AlphaMissense Data Resources in R
Bioconductor version: Release (3.19)
The AlphaMissense publication
Author: Martin Morgan [aut, cre] , Tram Nguyen [ctb], Chan Zuckerberg Initiative DAF CZF2019-002443 [fnd], NIH NCI ITCR U24CA180996 [fnd], NIH NCI IOTN U24CA232979 [fnd], NIH NCI ARTNet U24CA274159 [fnd]
Maintainer: Martin Morgan <mtmorgan.xyz at gmail.com>
citation("AlphaMissenseR")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AlphaMissenseR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AlphaMissenseR")
Accessing AlphaMissense Resources in R | HTML | R Script |
Issues & Solutions | HTML | R Script |
Visualization | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Annotation, FunctionalGenomics, GenePrediction, ImmunoOncology, SNP, Software, StructuralPrediction, Transcriptomics, VariantAnnotation |
Version | 1.0.2 |
In Bioconductor since | BioC 3.19 (R-4.4) (< 6 months) |
License | Artistic-2.0 |
Depends | dplyr |
Imports | rjsoncons (>= 1.0.1), DBI, duckdb (>= 0.9.1), rlang, curl, BiocFileCache, spdl, memoise, BiocBaseUtils, utils, stats, methods, whisker |
System Requirements | |
URL | https://mtmorgan.github.io/AlphaMissenseR/ |
Bug Reports | https://github.com/mtmorgan/AlphaMissenseR/issues |
See More
Suggests | BiocManager, BiocGenerics, GenomicRanges, GenomeInfoDb, AnnotationHub, ensembldb, httr, tidyr, r3dmol, bio3d, shiny, colorspace, knitr, rmarkdown, testthat (>= 3.0.0) |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | AlphaMissenseR_1.0.2.tar.gz |
Windows Binary (x86_64) | AlphaMissenseR_1.0.2.zip |
macOS Binary (x86_64) | AlphaMissenseR_1.0.2.tgz |
macOS Binary (arm64) | AlphaMissenseR_1.0.2.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/AlphaMissenseR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AlphaMissenseR |
Bioc Package Browser | https://code.bioconductor.org/browse/AlphaMissenseR/ |
Package Short Url | https://bioconductor.org/packages/AlphaMissenseR/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.19 | Source Archive |