Bioconductor version: Release (3.17)
Defines an S4 class for storing data from spatial -omics experiments. The class extends SingleCellExperiment to support storage and retrieval of additional information from spot-based and molecule-based platforms, including spatial coordinates, images, and image metadata. A specialized constructor function is included for data from the 10x Genomics Visium platform.
Author: Dario Righelli [aut, cre], Davide Risso [aut], Helena L. Crowell [aut], Lukas M. Weber [aut]
Maintainer: Dario Righelli <dario.righelli at gmail.com>
Citation (from within R,
enter citation("SpatialExperiment")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("SpatialExperiment")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SpatialExperiment")
HTML | R Script | Introduction to the SpatialExperiment class |
Reference Manual | ||
Text | NEWS |
Follow Installation instructions to use this package in your R session.
Source Package | SpatialExperiment_1.10.0.tar.gz |
Windows Binary | SpatialExperiment_1.10.0.zip |
macOS Binary (x86_64) | SpatialExperiment_1.10.0.tgz |
macOS Binary (arm64) | SpatialExperiment_1.10.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/SpatialExperiment |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SpatialExperiment |
Bioc Package Browser | https://code.bioconductor.org/browse/SpatialExperiment/ |
Package Short Url | https://bioconductor.org/packages/SpatialExperiment/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.17 | Source Archive |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: