BSgenome.Hsapiens.UCSC.hg19
DOI:
10.18129/B9.bioc.BSgenome.Hsapiens.UCSC.hg19
Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)
Bioconductor version: Release (3.14)
Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg19, based on GRCh37.p13) and stored in Biostrings objects.
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("BSgenome.Hsapiens.UCSC.hg19")
):
Installation
To install this package, start R (version
"4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BSgenome.Hsapiens.UCSC.hg19")
For older versions of R, please refer to the appropriate
Bioconductor release.
Documentation
Details
biocViews |
AnnotationData, BSgenome, Genetics, Homo_sapiens |
Version |
1.4.3 |
License |
Artistic-2.0 |
Depends |
BSgenome(>= 1.54.0) |
Imports |
BSgenome |
LinkingTo |
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Suggests |
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SystemRequirements |
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Enhances |
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URL |
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Depends On Me |
annotation, BSgenome.Hsapiens.UCSC.hg19.masked, CODEX, SCOPE, sequencing, traseR, variants |
Imports Me |
appreci8R, brainflowprobes, BSgenome.Hsapiens.UCSC.hg19.masked, ChIPComp, circRNAprofiler, decompTumor2Sig, HiLDA, MADSEQ, musicatk, RareVariantVis, RCAS, TCGAWorkflow, trena, uncoverappLib, YAPSA |
Suggests Me |
AneuFinder, ATACseqQC, BadRegionFinder, Basic4Cseq, BBCAnalyzer, biovizBase, ChIPpeakAnno, chromVAR, CNEr, CNVfilteR, CRISPRseek, customProDB, DAMEfinder, DNAshapeR, esATAC, FDb.FANTOM4.promoters.hg19, FDb.UCSC.snp135common.hg19, FDb.UCSC.snp137common.hg19, gcapc, GenomicAlignments, GenomicFeatures, GenomicRanges, GenomicScores, GenVisR, ggbio, gmapR, GUIDEseq, Gviz, h5vc, HiCDCPlus, InPAS, IntEREst, IsoformSwitchAnalyzeR, karyoploteR, maftools, MEDIPS, MesKit, MethReg, MinimumDistance, MiRaGE, motifbreakR, motifmatchr, MutationalPatterns, ORFik, OrganismDbi, pageRank, plotgardener, plyranges, ProteoDisco, qsea, R453Plus1Toolbox, REMP, rGADEM, RiboCrypt, RiboProfiling, Rsamtools, RSVSim, rtracklayer, SGSeq, signeR, SigsPack, SNPlocs.Hsapiens.dbSNP.20101109, SNPlocs.Hsapiens.dbSNP.20120608, SNPlocs.Hsapiens.dbSNP142.GRCh37, SNPlocs.Hsapiens.dbSNP144.GRCh37, StructuralVariantAnnotation, supersigs, UMI4Cats, VariantAnnotation, wavClusteR, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37 |
Links To Me |
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Package Archives
Follow
Installation instructions to use this
package in your R session.