RiboCrypt

DOI: 10.18129/B9.bioc.RiboCrypt    

Interactive visualization in genomics

Bioconductor version: Release (3.14)

R Package for interactive visualization and browsing NGS data. It contains a browser for both transcript and genomic coordinate view. In addition a QC and general metaplots are included, among others differential translation plots and gene expression plots. The package is still under development.

Author: Michal Swirski [aut, cre], Haakon Tjeldnes [ctb]

Maintainer: Michal Swirski <michal.swirski at uw.edu.pl>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RiboCrypt")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RiboCrypt")

 

HTML	R Script	RiboCrypt_overview.html
PDF		Reference Manual
Text		LICENSE

Details

biocViews	RNASeq, RiboSeq, Sequencing, Software
Version	1.0.0
In Bioconductor since	BioC 3.14 (R-4.1) (< 6 months)
License	MIT + file LICENSE
Depends	R (>= 3.6.0), ORFik(>= 1.13.12)
Imports	BiocGenerics, BiocParallel, Biostrings, data.table, dplyr, GenomeInfoDb, GenomicFeatures, GenomicRanges, ggplot2, IRanges, plotly, rlang
LinkingTo
Suggests	testthat, rmarkdown, knitr, BiocStyle, BSgenome, BSgenome.Hsapiens.UCSC.hg19
SystemRequirements
Enhances
URL	https://github.com/m-swirski/RiboCrypt
BugReports	https://github.com/m-swirski/RiboCrypt/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RiboCrypt_1.0.0.tar.gz
Windows Binary	RiboCrypt_1.0.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra)	RiboCrypt_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RiboCrypt
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RiboCrypt
Package Short Url	https://bioconductor.org/packages/RiboCrypt/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.14	Source Archive