Summary Read Report

---

1 Other Reports

---

1. Report by id
2. Report by barcode
3. Report by group
4. Report by guide
5. Report by amplicon

---

2 Explanation of variables

---

Experiment Count - how many IDs belongs to this barcode
Read Count - how many reads belongs to this barcode
Bad Base Quality - how many reads had base quality worse than specified (default is 0)
Bad Average Quality - how many reads had average base quality worse than specified (default is 0)
Bad Alphabet - how many reads had alphabet with bases other than A, C, G, T
Filtered Read Count - how many reads were left after filtering
Unique Reads - how many reads (forward and reverse together) for this barcode is unique
Assigned Reads/Unassigned Reads - how many reads have been assigned/not assigned to any of the experiments

---

3 Total reads

---

3.1 Read Quality

3.2 Read assignment

3.3 Edits

---

4 Reads by barcode

---

---

5 Summary Table

---

Barcodes	Experiment Count	Read Count	Bad base quality	Bad average quality	Bad alphabet	Good Reads	Unique Reads	Unassigned Reads	Assigned Reads
barcode_1	2	20	0	3	3	14	8	1	7
barcode_2	3	21	0	0	0	21	9	0	9

Table 1. Reads distributed for each barcode

---