Bioconductor version: Release (3.13)
Discovery of genome-wide variable alternative splicing events from short-read RNA-seq data and visualizations of gene splicing information for publication-quality multi-panel figures in a population.
Author: Huihui Yu [aut, cre] , Qian Du [aut] , Chi Zhang [aut]
Maintainer: Huihui Yu <yuhuihui2011 at foxmail.com>
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if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("VaSP")
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HTML | R Script | user guide |
Reference Manual | ||
Text | NEWS |
biocViews | AlternativeSplicing, Clustering, DifferentialExpression, DifferentialSplicing, ImmunoOncology, KEGG, Preprocessing, RNASeq, Software, StatisticalMethod, Visualization |
Version | 1.4.0 |
In Bioconductor since | BioC 3.12 (R-4.0) (1 year) |
License | GPL (>= 2.0) |
Depends | R (>= 4.0), ballgown |
Imports | IRanges, GenomicRanges, S4Vectors, Sushi, parallel, matrixStats, GenomicAlignments, GenomeInfoDb, Rsamtools, cluster, stats, graphics, methods |
LinkingTo | |
Suggests | knitr, rmarkdown |
SystemRequirements | |
Enhances | |
URL | https://github.com/yuhuihui2011/VaSP |
BugReports | https://github.com/yuhuihui2011/VaSP/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | VaSP_1.4.0.tar.gz |
Windows Binary | VaSP_1.4.0.zip |
macOS 10.13 (High Sierra) | VaSP_1.4.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/VaSP |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/VaSP |
Package Short Url | https://bioconductor.org/packages/VaSP/ |
Package Downloads Report | Download Stats |
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