Sushi

DOI: 10.18129/B9.bioc.Sushi    

Tools for visualizing genomics data

Bioconductor version: Release (3.13)

Flexible, quantitative, and integrative genomic visualizations for publication-quality multi-panel figures

Author: Douglas H Phanstiel <dphansti at stanford.edu>

Maintainer: Douglas H Phanstiel <dphansti at stanford.edu>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Sushi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Sushi")

 

PDF	R Script	Sushi
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataRepresentation, Genetics, HiC, Infrastructure, Sequencing, Software, Visualization
Version	1.30.0
In Bioconductor since	BioC 2.14 (R-3.1) (7.5 years)
License	GPL (>= 2)
Depends	R (>= 2.10), zoo, biomaRt
Imports	graphics, grDevices
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	ChromSCape, diffloop, Ularcirc, VaSP
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Sushi_1.30.0.tar.gz
Windows Binary	Sushi_1.30.0.zip
macOS 10.13 (High Sierra)	Sushi_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Sushi
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Sushi
Package Short Url	https://bioconductor.org/packages/Sushi/
Package Downloads Report	Download Stats