This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see HCAExplorer.
Bioconductor version: Release (3.13)
Search, browse, reference, and download resources from the Human Cell Atlas data portal. Development of this package is supported through funds from the Chan / Zuckerberg initiative.
Author: Daniel Van Twisk <Daniel.VanTwisk at RoswellPark.org>, Martin Morgan <Martin.Morgan at RoswellPark.org>, Bioconductor Package Maintainer <maintainer at bioconductor.org>
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("HCAExplorer")
):
To install this package, start R (version "4.1") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("HCAExplorer")
For older versions of R, please refer to the appropriate Bioconductor release.
Reference Manual |
biocViews | DataImport, Sequencing, Software |
Version | 1.6.0 |
In Bioconductor since | BioC 3.10 (R-3.6) (2 years) |
License | Artistic-2.0 |
Depends | R (>= 3.6.0), dplyr |
Imports | BiocFileCache, HCAMatrixBrowser, S4Vectors, LoomExperiment, vctrs, curl, httr, jsonlite, methods, plyr, readr, rlang, tibble, tidygraph, utils, xml2 |
LinkingTo | |
Suggests | BiocStyle, knitr, rmarkdown, testthat (>= 2.1.0) |
SystemRequirements | |
Enhances | |
URL | https://github.com/Bioconductor/HCABrowser |
BugReports | https://github.com/Bioconductor/HCABrowser/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | |
macOS 10.13 (High Sierra) | |
Source Repository | git clone https://git.bioconductor.org/packages/HCAExplorer |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HCAExplorer |
Package Short Url | https://bioconductor.org/packages/HCAExplorer/ |
Package Downloads Report | Download Stats |
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