This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see HCAExplorer.
Bioconductor version: 3.12
Search, browse, reference, and download resources from the Human Cell Atlas data portal. Development of this package is supported through funds from the Chan / Zuckerberg initiative.
Author: Daniel Van Twisk [aut], Martin Morgan [aut], Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("HCAExplorer")
):
To install this package, start R (version "4.0") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("HCAExplorer")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HCAExplorer")
HTML | R Script | HCAExplorer |
Reference Manual |
biocViews | DataImport, Sequencing, Software |
Version | 1.4.0 |
In Bioconductor since | BioC 3.10 (R-3.6) (1.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.6.0), dplyr |
Imports | BiocFileCache, HCAMatrixBrowser, S4Vectors, LoomExperiment, vctrs, curl, httr, jsonlite, methods, plyr, readr, rlang, tibble, tidygraph, utils, xml2 |
LinkingTo | |
Suggests | BiocStyle, knitr, rmarkdown, testthat (>= 2.1.0) |
SystemRequirements | |
Enhances | |
URL | https://github.com/Bioconductor/HCABrowser |
BugReports | https://github.com/Bioconductor/HCABrowser/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | HCAExplorer_1.4.0.tar.gz |
Windows Binary | HCAExplorer_1.3.1.zip |
macOS 10.13 (High Sierra) | HCAExplorer_1.4.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/HCAExplorer |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HCAExplorer |
Package Short Url | https://bioconductor.org/packages/HCAExplorer/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: